Wall clock time and date at job start Sun Mar 29 2020 21:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47025 * 226.62543 * 3 2 1 5 5 C 1.37098 * 120.00661 * 263.95362 * 4 3 2 6 6 H 1.07993 * 120.00683 * 200.22075 * 5 4 3 7 7 C 1.38950 * 119.99556 * 20.21693 * 5 4 3 8 8 N 1.31412 * 119.99904 * 21.42798 * 7 5 4 9 9 Si 1.86801 * 120.00243 * 201.42672 * 7 5 4 10 10 H 1.48491 * 109.47064 * 59.99783 * 9 7 5 11 11 H 1.48503 * 109.47391 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46872 * 300.00001 * 9 7 5 13 13 C 1.34783 * 119.99860 * 83.95698 * 4 3 2 14 14 O 1.21294 * 120.00038 * 180.02562 * 13 4 3 15 15 C 1.50696 * 119.99737 * 359.97438 * 13 4 3 16 16 O 1.42908 * 109.47016 * 180.02562 * 15 13 4 17 17 C 1.42898 * 114.00008 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47058 * 179.97438 * 17 16 15 19 19 C 1.53002 * 117.50154 * 243.62466 * 18 17 16 20 20 C 1.52999 * 117.49881 * 175.00115 * 18 17 16 21 21 H 1.09008 * 109.47050 * 106.62955 * 3 2 1 22 22 H 1.08996 * 109.47144 * 346.63185 * 3 2 1 23 23 H 0.97000 * 119.99966 * 179.97438 * 8 7 5 24 24 H 1.08999 * 109.47519 * 60.00248 * 15 13 4 25 25 H 1.08998 * 109.47301 * 299.99935 * 15 13 4 26 26 H 1.08998 * 109.46980 * 59.99989 * 17 16 15 27 27 H 1.08994 * 109.47525 * 300.00175 * 17 16 15 28 28 H 1.09000 * 115.55001 * 29.33544 * 18 17 16 29 29 H 1.08992 * 117.49743 * 0.02562 * 19 18 17 30 30 H 1.08999 * 117.49649 * 145.02201 * 19 18 17 31 31 H 1.08998 * 117.50061 * 214.98397 * 20 18 17 32 32 H 1.09001 * 117.50008 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.9494 1.0039 5 6 3.4417 2.2230 0.6327 6 1 4.0907 2.8121 1.2637 7 6 2.9572 2.7560 -0.5556 8 7 1.8748 2.2551 -1.1072 9 14 3.8445 4.1845 -1.3689 10 1 5.2352 3.7809 -1.6974 11 1 3.1317 4.5654 -2.6147 12 1 3.8716 5.3434 -0.4406 13 6 3.2048 0.5702 2.2927 14 8 3.6083 1.3558 3.1241 15 6 2.8242 -0.8296 2.7009 16 8 3.0255 -0.9871 4.1070 17 6 2.6921 -2.2863 4.5999 18 6 2.9460 -2.3403 6.1077 19 6 4.0184 -3.3094 6.6093 20 6 2.5384 -3.6160 6.8475 21 1 2.9712 0.2949 -0.9848 22 1 2.9718 -0.9990 0.2376 23 1 1.5364 2.6274 -1.9365 24 1 3.4439 -1.5465 2.1623 25 1 1.7751 -1.0051 2.4626 26 1 3.3091 -3.0336 4.1009 27 1 1.6404 -2.4917 4.4006 28 1 2.8348 -1.3941 6.6373 29 1 4.5433 -3.9082 5.8651 30 1 4.6131 -3.0008 7.4691 31 1 2.1595 -3.5092 7.8639 32 1 2.0898 -4.4171 6.2599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299616191.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:14 Heat of formation + Delta-G solvation = -14.451354 kcal Electronic energy + Delta-G solvation = -16519.081655 eV Core-core repulsion = 13674.712123 eV Total energy + Delta-G solvation = -2844.369532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.05530 -37.97463 -36.30754 -35.61347 -34.29417 -31.91788 -28.65381 -27.43992 -26.19319 -24.17235 -22.47168 -20.74710 -19.39607 -17.95649 -16.97892 -16.51715 -15.99197 -15.57320 -15.33985 -14.68096 -14.16250 -14.09621 -13.50849 -13.11535 -13.00395 -12.34620 -12.02174 -11.83869 -11.66087 -11.60049 -11.30243 -11.13966 -10.94753 -10.62893 -10.52264 -10.43845 -10.38834 -10.18739 -9.31688 -9.25315 -8.54760 -8.04615 -6.51313 -4.02458 3.12191 3.20712 3.23092 3.40526 3.59341 3.75030 3.91437 3.94270 4.15417 4.70054 4.82971 4.84018 4.88539 5.11445 5.20838 5.31623 5.39166 5.50703 5.51741 5.62214 5.65944 5.78609 5.78661 5.99789 6.04723 6.18772 6.42215 7.35368 7.46797 7.91642 8.28055 8.69984 8.98708 9.16684 9.71675 10.55214 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038682 B = 0.005561 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.679264 B = 5033.571986 C = 5574.399422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.243 3.757 3 C 0.221 3.779 4 N -0.443 5.443 5 C -0.314 4.314 6 H 0.108 0.892 7 C 0.033 3.967 8 N -0.877 5.877 9 Si 0.929 3.071 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.459 3.541 14 O -0.550 6.550 15 C 0.050 3.950 16 O -0.357 6.357 17 C 0.089 3.911 18 C -0.149 4.149 19 C -0.177 4.177 20 C -0.177 4.177 21 H 0.127 0.873 22 H 0.084 0.916 23 H 0.274 0.726 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 -11.522 5.038 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.076 4.076 3 C 0.093 3.907 4 N -0.166 5.166 5 C -0.441 4.441 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.516 5.516 9 Si 0.756 3.244 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.247 3.753 14 O -0.431 6.431 15 C -0.030 4.030 16 O -0.275 6.275 17 C 0.012 3.988 18 C -0.167 4.167 19 C -0.214 4.214 20 C -0.214 4.214 21 H 0.145 0.855 22 H 0.101 0.899 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.108 -10.916 5.418 12.367 hybrid contribution 0.455 0.537 -0.825 1.084 sum 2.563 -10.379 4.593 11.636 Atomic orbital electron populations 1.80896 1.13570 1.11129 1.09339 1.29308 0.95385 0.90698 0.92189 1.18720 0.81689 0.92770 0.97532 1.43557 1.57366 1.11737 1.03937 1.19654 1.27992 0.90573 1.05852 0.87417 1.25299 0.94786 0.99046 0.97974 1.69834 1.18039 1.43359 1.20354 0.85938 0.79348 0.80814 0.78339 1.19652 1.21026 1.19766 1.19798 0.84327 0.88562 0.82636 1.90573 1.48647 1.54273 1.49562 1.22306 1.00406 0.97418 0.82909 1.88017 1.87519 1.30541 1.21455 1.22014 0.98912 0.85620 0.92235 1.22127 1.04268 0.95601 0.94685 1.23051 0.91682 1.03163 1.03546 1.22963 0.98139 0.98793 1.01464 0.85549 0.89859 0.91545 0.91449 0.91721 0.93317 0.93059 0.86661 0.88711 0.88696 0.88555 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.05 18.54 42.15 0.78 -10.27 16 2 C 0.24 5.28 12.82 -20.76 -0.27 5.01 16 3 C 0.22 4.27 4.91 -6.83 -0.03 4.23 16 4 N -0.44 -10.41 2.60 -117.94 -0.31 -10.71 16 5 C -0.31 -8.12 9.27 -14.93 -0.14 -8.26 16 6 H 0.11 2.94 7.43 -52.49 -0.39 2.55 16 7 C 0.03 0.81 4.84 -17.47 -0.08 0.72 16 8 N -0.88 -22.12 9.58 55.50 0.53 -21.59 16 9 Si 0.93 19.57 29.60 -169.99 -5.03 14.54 16 10 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.46 10.86 7.64 -10.98 -0.08 10.77 16 14 O -0.55 -15.36 16.17 -14.36 -0.23 -15.59 16 15 C 0.05 0.91 5.02 36.00 0.18 1.09 16 16 O -0.36 -6.76 9.88 -55.14 -0.54 -7.31 16 17 C 0.09 1.23 6.22 37.16 0.23 1.46 16 18 C -0.15 -1.85 6.06 -90.62 -0.55 -2.40 16 19 C -0.18 -1.81 10.18 -26.73 -0.27 -2.09 16 20 C -0.18 -1.68 10.25 -26.73 -0.27 -1.96 16 21 H 0.13 2.47 6.63 -51.92 -0.34 2.12 16 22 H 0.08 1.19 6.69 -51.93 -0.35 0.84 16 23 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 24 H 0.07 0.99 7.42 -51.93 -0.39 0.60 16 25 H 0.06 1.13 7.49 -51.93 -0.39 0.74 16 26 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 285.48 15.07 4.30 4.30 Total: -1.00 -32.00 285.48 -5.72 -37.72 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -3.93 Total: 0.31 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -1.29 Total: 8.60 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 1.01 Total: -42.57 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.78 Total: -22.90 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.00 -5.72 -37.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299616191.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.272 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds