Wall clock time and date at job start Sun Mar 29 2020 21:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47025 * 226.62543 * 3 2 1 5 5 C 1.37098 * 120.00661 * 263.95362 * 4 3 2 6 6 H 1.07993 * 120.00683 * 200.22075 * 5 4 3 7 7 C 1.38950 * 119.99556 * 20.21693 * 5 4 3 8 8 N 1.31412 * 119.99904 * 21.42798 * 7 5 4 9 9 Si 1.86801 * 120.00243 * 201.42672 * 7 5 4 10 10 H 1.48491 * 109.47064 * 59.99783 * 9 7 5 11 11 H 1.48503 * 109.47391 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46872 * 300.00001 * 9 7 5 13 13 C 1.34783 * 119.99860 * 83.95698 * 4 3 2 14 14 O 1.21294 * 120.00038 * 180.02562 * 13 4 3 15 15 C 1.50696 * 119.99737 * 359.97438 * 13 4 3 16 16 O 1.42908 * 109.47016 * 180.02562 * 15 13 4 17 17 C 1.42898 * 114.00008 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47058 * 179.97438 * 17 16 15 19 19 C 1.53002 * 117.50154 * 243.62466 * 18 17 16 20 20 C 1.52999 * 117.49881 * 175.00115 * 18 17 16 21 21 H 1.09008 * 109.47050 * 106.62955 * 3 2 1 22 22 H 1.08996 * 109.47144 * 346.63185 * 3 2 1 23 23 H 0.97000 * 119.99966 * 179.97438 * 8 7 5 24 24 H 1.08999 * 109.47519 * 60.00248 * 15 13 4 25 25 H 1.08998 * 109.47301 * 299.99935 * 15 13 4 26 26 H 1.08998 * 109.46980 * 59.99989 * 17 16 15 27 27 H 1.08994 * 109.47525 * 300.00175 * 17 16 15 28 28 H 1.09000 * 115.55001 * 29.33544 * 18 17 16 29 29 H 1.08992 * 117.49743 * 0.02562 * 19 18 17 30 30 H 1.08999 * 117.49649 * 145.02201 * 19 18 17 31 31 H 1.08998 * 117.50061 * 214.98397 * 20 18 17 32 32 H 1.09001 * 117.50008 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.9494 1.0039 5 6 3.4417 2.2230 0.6327 6 1 4.0907 2.8121 1.2637 7 6 2.9572 2.7560 -0.5556 8 7 1.8748 2.2551 -1.1072 9 14 3.8445 4.1845 -1.3689 10 1 5.2352 3.7809 -1.6974 11 1 3.1317 4.5654 -2.6147 12 1 3.8716 5.3434 -0.4406 13 6 3.2048 0.5702 2.2927 14 8 3.6083 1.3558 3.1241 15 6 2.8242 -0.8296 2.7009 16 8 3.0255 -0.9871 4.1070 17 6 2.6921 -2.2863 4.5999 18 6 2.9460 -2.3403 6.1077 19 6 4.0184 -3.3094 6.6093 20 6 2.5384 -3.6160 6.8475 21 1 2.9712 0.2949 -0.9848 22 1 2.9718 -0.9990 0.2376 23 1 1.5364 2.6274 -1.9365 24 1 3.4439 -1.5465 2.1623 25 1 1.7751 -1.0051 2.4626 26 1 3.3091 -3.0336 4.1009 27 1 1.6404 -2.4917 4.4006 28 1 2.8348 -1.3941 6.6373 29 1 4.5433 -3.9082 5.8651 30 1 4.6131 -3.0008 7.4691 31 1 2.1595 -3.5092 7.8639 32 1 2.0898 -4.4171 6.2599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299616191.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:14 Heat of formation + Delta-G solvation = -34.446982 kcal Electronic energy + Delta-G solvation = -16519.948731 eV Core-core repulsion = 13674.712123 eV Total energy + Delta-G solvation = -2845.236607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74401 -39.14719 -37.68682 -37.16877 -36.13415 -33.81765 -30.10483 -29.07539 -27.50707 -25.89662 -23.21738 -21.76768 -21.05654 -19.78619 -18.45534 -18.15308 -17.36465 -16.94457 -16.79154 -16.18873 -15.70813 -15.41041 -14.91144 -14.75260 -14.55631 -13.92468 -13.53398 -13.38199 -13.30668 -13.03359 -12.86959 -12.36304 -12.34905 -12.19820 -12.10313 -12.01790 -11.34699 -11.20432 -11.12773 -10.45601 -10.41018 -9.94264 -8.42099 -6.00055 1.40483 1.48863 1.57783 1.75030 1.98342 2.23330 2.30067 2.49210 2.93669 2.98382 3.31703 3.55600 3.86712 3.98348 4.00188 4.14946 4.18644 4.31580 4.37573 4.57553 4.60790 4.73985 4.80318 4.86115 5.03691 5.24801 5.27861 5.47482 5.93373 6.21478 6.43861 6.99083 7.09771 7.30193 7.88071 8.61746 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038682 B = 0.005561 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.679264 B = 5033.571986 C = 5574.399422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.255 3.745 3 C 0.219 3.781 4 N -0.451 5.451 5 C -0.344 4.344 6 H 0.080 0.920 7 C 0.009 3.991 8 N -0.891 5.891 9 Si 0.989 3.011 10 H -0.258 1.258 11 H -0.278 1.278 12 H -0.284 1.284 13 C 0.445 3.555 14 O -0.608 6.608 15 C 0.061 3.939 16 O -0.395 6.395 17 C 0.085 3.915 18 C -0.182 4.182 19 C -0.173 4.173 20 C -0.155 4.155 21 H 0.127 0.873 22 H 0.145 0.855 23 H 0.276 0.724 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 -13.506 4.377 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.063 4.063 3 C 0.093 3.907 4 N -0.172 5.172 5 C -0.471 4.471 6 H 0.098 0.902 7 C -0.194 4.194 8 N -0.529 5.529 9 Si 0.813 3.187 10 H -0.182 1.182 11 H -0.203 1.203 12 H -0.210 1.210 13 C 0.235 3.765 14 O -0.493 6.493 15 C -0.019 4.019 16 O -0.314 6.314 17 C 0.009 3.991 18 C -0.200 4.200 19 C -0.210 4.210 20 C -0.192 4.192 21 H 0.144 0.856 22 H 0.162 0.838 23 H 0.086 0.914 24 H 0.132 0.868 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.529 -12.941 4.734 14.010 hybrid contribution 0.302 1.155 -0.573 1.325 sum 2.831 -11.786 4.161 12.816 Atomic orbital electron populations 1.80902 1.14759 1.12381 1.10549 1.29760 0.95837 0.89581 0.91073 1.19143 0.80132 0.94790 0.96656 1.43736 1.56845 1.11712 1.04942 1.19563 1.28932 0.92176 1.06479 0.90201 1.25923 0.94911 1.00980 0.97587 1.69913 1.18399 1.44211 1.20370 0.85055 0.79010 0.77543 0.77093 1.18201 1.20303 1.21034 1.20813 0.83045 0.90521 0.82112 1.90528 1.51113 1.56487 1.51132 1.22199 1.01588 0.94472 0.83596 1.87983 1.88016 1.33699 1.21669 1.22276 0.99916 0.83927 0.92950 1.22109 1.07692 0.95990 0.94218 1.23168 0.92148 1.01932 1.03736 1.23077 0.97570 0.96885 1.01676 0.85553 0.83815 0.91420 0.86823 0.90776 0.90832 0.92233 0.89093 0.87586 0.88273 0.87528 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.32 18.54 20.01 0.37 -22.94 16 2 C 0.26 10.71 12.82 89.44 1.15 11.86 16 3 C 0.22 7.99 4.91 84.58 0.42 8.41 16 4 N -0.45 -20.97 2.60 -645.43 -1.68 -22.65 16 5 C -0.34 -18.04 9.27 84.04 0.78 -17.26 16 6 H 0.08 4.55 7.43 -2.91 -0.02 4.53 16 7 C 0.01 0.42 4.84 84.93 0.41 0.83 16 8 N -0.89 -44.22 9.58 21.66 0.21 -44.01 16 9 Si 0.99 39.83 29.60 68.60 2.03 41.86 16 10 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 11 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 C 0.45 21.07 7.64 87.65 0.67 21.74 16 14 O -0.61 -35.12 16.17 15.96 0.26 -34.87 16 15 C 0.06 2.11 5.02 71.23 0.36 2.47 16 16 O -0.39 -14.63 9.88 -129.94 -1.28 -15.91 16 17 C 0.09 2.19 6.22 71.98 0.45 2.64 16 18 C -0.18 -4.35 6.06 -10.79 -0.07 -4.41 16 19 C -0.17 -3.17 10.18 30.60 0.31 -2.85 16 20 C -0.16 -2.57 10.25 30.59 0.31 -2.25 16 21 H 0.13 4.67 6.63 -2.38 -0.02 4.66 16 22 H 0.14 3.47 6.69 -2.39 -0.02 3.45 16 23 H 0.28 13.22 8.31 -92.71 -0.77 12.45 16 24 H 0.11 2.84 7.42 -2.39 -0.02 2.82 16 25 H 0.07 2.43 7.49 -2.39 -0.02 2.41 16 26 H 0.07 1.50 7.87 -2.39 -0.02 1.48 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.11 1.69 8.03 -2.39 -0.02 1.68 16 30 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -71.56 285.48 5.82 -65.74 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.13 Total: 11.61 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 4.79 Total: 21.17 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -1.10 Total: -89.60 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -1.03 Total: -50.78 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -71.56 5.82 -65.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299616191.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.295 kcal (2) G-P(sol) polarization free energy of solvation -71.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds