Wall clock time and date at job start Sun Mar 29 2020 22:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30010 * 127.33494 * 2 1 4 4 O 1.20651 * 112.32260 * 179.73765 * 3 2 1 5 5 C 1.33521 * 113.15553 * 0.46944 * 4 3 2 6 6 C 1.50706 * 126.83228 * 179.81511 * 5 4 3 7 7 C 1.52997 * 109.47238 * 299.68088 * 6 5 4 8 8 C 1.52992 * 109.47161 * 59.68623 * 6 5 4 9 9 C 1.37422 * 106.32981 * 359.54871 * 5 4 3 10 10 C 1.47317 * 128.56951 * 180.27550 * 9 5 4 11 11 O 1.21637 * 119.99738 * 90.00969 * 10 9 5 12 12 N 1.34782 * 120.00210 * 270.00171 * 10 9 5 13 13 C 1.36965 * 120.00119 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99822 * 0.02562 * 13 12 10 15 15 C 1.38982 * 120.00144 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99849 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00040 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47147 * 90.00099 * 17 15 13 19 19 H 1.48501 * 109.47107 * 209.99792 * 17 15 13 20 20 H 1.48503 * 109.47179 * 329.99944 * 17 15 13 21 21 H 1.08996 * 109.47842 * 269.97914 * 1 2 3 22 22 H 1.09002 * 109.46897 * 29.97873 * 1 2 3 23 23 H 1.08993 * 109.47275 * 149.97458 * 1 2 3 24 24 H 1.08998 * 109.46456 * 179.67921 * 6 5 4 25 25 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.46832 * 60.00314 * 7 6 5 27 27 H 1.09004 * 109.47261 * 300.00295 * 7 6 5 28 28 H 1.09001 * 109.47066 * 299.99783 * 8 6 5 29 29 H 1.08996 * 109.47747 * 59.99449 * 8 6 5 30 30 H 1.09002 * 109.47103 * 179.97438 * 8 6 5 31 31 H 0.96996 * 119.99632 * 359.97438 * 12 10 9 32 32 H 0.96999 * 119.99728 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7212 0.0051 5 6 3.6500 -0.6005 -0.0006 6 6 4.9720 -1.3240 -0.0006 7 6 5.7655 -0.9364 -1.2500 8 6 5.7657 -0.9359 1.2485 9 6 2.3992 -1.1699 -0.0003 10 6 2.0405 -2.5987 0.0002 11 8 1.8923 -3.1881 1.0538 12 7 1.8763 -3.2528 -1.1668 13 6 1.5423 -4.5811 -1.1663 14 1 1.4100 -5.1042 -0.2307 15 6 1.3736 -5.2557 -2.3696 16 7 1.5340 -4.6190 -3.5079 17 14 0.9173 -7.0671 -2.3689 18 1 -0.5614 -7.2051 -2.3701 19 1 1.4762 -7.7188 -3.5806 20 1 1.4742 -7.7174 -1.1555 21 1 -0.3635 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5142 24 1 4.7973 -2.3999 -0.0003 25 1 6.7216 -1.4600 -1.2502 26 1 5.9402 0.1396 -1.2501 27 1 5.2000 -1.2128 -2.1399 28 1 5.9403 0.1400 1.2483 29 1 5.2004 -1.2120 2.1386 30 1 6.7217 -1.4595 1.2487 31 1 1.9941 -2.7826 -2.0070 32 1 1.4159 -5.0897 -4.3477 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299722007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:37 Heat of formation + Delta-G solvation = 1.118340 kcal Electronic energy + Delta-G solvation = -17070.248564 eV Core-core repulsion = 14226.554184 eV Total energy + Delta-G solvation = -2843.694379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.36731 -38.13807 -35.76113 -34.17144 -33.89611 -31.35505 -30.36896 -28.39271 -27.08353 -25.60203 -23.29131 -22.57842 -19.86297 -18.82019 -18.08371 -17.26027 -16.76742 -15.66880 -15.14631 -14.70660 -14.07435 -13.85240 -13.32583 -13.20113 -12.95473 -12.78686 -12.61154 -12.49266 -12.13285 -11.67385 -11.25233 -11.21675 -11.16339 -11.05063 -10.51506 -10.47050 -10.34857 -9.63337 -9.46109 -8.99881 -8.59498 -8.10990 -6.54092 -3.95101 1.82470 2.42853 3.08353 3.20642 3.25869 3.32476 3.62440 4.08719 4.47546 4.61099 4.94087 5.02592 5.17573 5.19463 5.31202 5.61882 5.69071 5.76587 5.79817 5.87260 5.90204 5.99962 6.02729 6.13775 6.24233 6.32249 6.38289 6.49853 7.43772 7.92239 8.45854 8.66632 9.03204 9.39094 9.90063 10.62696 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.024866 B = 0.007699 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.742648 B = 3635.819166 C = 4139.368996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.042 3.958 3 N -0.369 5.369 4 O 0.089 5.911 5 C -0.001 4.001 6 C -0.012 4.012 7 C -0.147 4.147 8 C -0.146 4.146 9 C -0.204 4.204 10 C 0.508 3.492 11 O -0.584 6.584 12 N -0.540 5.540 13 C -0.305 4.305 14 H 0.107 0.893 15 C 0.027 3.973 16 N -0.893 5.893 17 Si 0.932 3.068 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.268 1.268 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.395 0.605 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.126 6.930 2.259 8.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 N -0.076 5.076 4 O 0.027 5.973 5 C -0.065 4.065 6 C -0.031 4.031 7 C -0.205 4.205 8 C -0.203 4.203 9 C -0.212 4.212 10 C 0.292 3.708 11 O -0.470 6.470 12 N -0.174 5.174 13 C -0.434 4.434 14 H 0.124 0.876 15 C -0.176 4.176 16 N -0.533 5.533 17 Si 0.759 3.241 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.192 1.192 21 H 0.099 0.901 22 H 0.094 0.906 23 H 0.105 0.895 24 H 0.124 0.876 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.821 7.761 2.736 9.537 hybrid contribution -0.355 -1.360 -0.610 1.532 sum 4.465 6.401 2.126 8.089 Atomic orbital electron populations 1.20148 0.85634 1.03823 1.03419 1.24795 0.98499 0.87338 1.01344 1.73506 0.89388 1.23711 1.21031 1.84405 1.21284 1.23013 1.68596 1.24548 0.97190 0.83308 1.01407 1.19806 0.86974 0.99262 0.97099 1.21868 0.99971 1.01908 0.96705 1.21850 0.99870 1.01916 0.96712 1.22415 0.91763 0.96595 1.10405 1.16455 0.85955 0.83309 0.85064 1.90647 1.57375 1.67645 1.31314 1.41835 1.58673 1.10478 1.06392 1.19755 1.44194 0.84805 0.94673 0.87554 1.25333 0.96952 1.00741 0.94554 1.69623 1.48295 1.37623 0.97711 0.85823 0.78808 0.81492 0.78004 1.20209 1.20765 1.19211 0.90100 0.90614 0.89547 0.87579 0.91400 0.92046 0.91767 0.92048 0.91994 0.91416 0.77155 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.49 36.01 0.38 -0.78 16 2 C 0.04 0.80 7.59 -79.76 -0.61 0.19 16 3 N -0.37 -6.85 12.01 34.79 0.42 -6.43 16 4 O 0.09 1.57 11.06 18.58 0.21 1.77 16 5 C 0.00 -0.02 6.06 -34.60 -0.21 -0.23 16 6 C -0.01 -0.18 3.33 -91.77 -0.31 -0.48 16 7 C -0.15 -1.85 9.18 37.16 0.34 -1.51 16 8 C -0.15 -1.81 9.17 37.15 0.34 -1.47 16 9 C -0.20 -4.27 6.24 -102.90 -0.64 -4.91 16 10 C 0.51 12.46 7.25 -12.57 -0.09 12.37 16 11 O -0.58 -16.31 16.68 5.25 0.09 -16.23 16 12 N -0.54 -13.69 5.28 -11.98 -0.06 -13.75 16 13 C -0.30 -8.26 9.68 -14.98 -0.15 -8.41 16 14 H 0.11 3.01 7.15 -52.48 -0.38 2.63 16 15 C 0.03 0.71 5.50 -17.46 -0.10 0.61 16 16 N -0.89 -23.56 13.05 55.50 0.72 -22.84 16 17 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 22 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.11 1.79 7.71 -51.93 -0.40 1.39 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.39 9.79 7.88 -40.82 -0.32 9.47 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -30.34 287.77 -4.39 -34.72 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.04 Total: 7.76 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.04 Total: -4.62 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 1.08 Total: -43.01 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.29 Total: -14.45 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.34 -4.39 -34.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299722007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.840 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds