Wall clock time and date at job start Sun Mar 29 2020 22:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30010 * 127.33494 * 2 1 4 4 O 1.20651 * 112.32260 * 179.73765 * 3 2 1 5 5 C 1.33521 * 113.15553 * 0.46944 * 4 3 2 6 6 C 1.50706 * 126.83228 * 179.81511 * 5 4 3 7 7 C 1.52997 * 109.47238 * 299.68088 * 6 5 4 8 8 C 1.52992 * 109.47161 * 59.68623 * 6 5 4 9 9 C 1.37422 * 106.32981 * 359.54871 * 5 4 3 10 10 C 1.47317 * 128.56951 * 180.27550 * 9 5 4 11 11 O 1.21637 * 119.99738 * 90.00969 * 10 9 5 12 12 N 1.34782 * 120.00210 * 270.00171 * 10 9 5 13 13 C 1.36965 * 120.00119 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99822 * 0.02562 * 13 12 10 15 15 C 1.38982 * 120.00144 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99849 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00040 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47147 * 90.00099 * 17 15 13 19 19 H 1.48501 * 109.47107 * 209.99792 * 17 15 13 20 20 H 1.48503 * 109.47179 * 329.99944 * 17 15 13 21 21 H 1.08996 * 109.47842 * 269.97914 * 1 2 3 22 22 H 1.09002 * 109.46897 * 29.97873 * 1 2 3 23 23 H 1.08993 * 109.47275 * 149.97458 * 1 2 3 24 24 H 1.08998 * 109.46456 * 179.67921 * 6 5 4 25 25 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.46832 * 60.00314 * 7 6 5 27 27 H 1.09004 * 109.47261 * 300.00295 * 7 6 5 28 28 H 1.09001 * 109.47066 * 299.99783 * 8 6 5 29 29 H 1.08996 * 109.47747 * 59.99449 * 8 6 5 30 30 H 1.09002 * 109.47103 * 179.97438 * 8 6 5 31 31 H 0.96996 * 119.99632 * 359.97438 * 12 10 9 32 32 H 0.96999 * 119.99728 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7212 0.0051 5 6 3.6500 -0.6005 -0.0006 6 6 4.9720 -1.3240 -0.0006 7 6 5.7655 -0.9364 -1.2500 8 6 5.7657 -0.9359 1.2485 9 6 2.3992 -1.1699 -0.0003 10 6 2.0405 -2.5987 0.0002 11 8 1.8923 -3.1881 1.0538 12 7 1.8763 -3.2528 -1.1668 13 6 1.5423 -4.5811 -1.1663 14 1 1.4100 -5.1042 -0.2307 15 6 1.3736 -5.2557 -2.3696 16 7 1.5340 -4.6190 -3.5079 17 14 0.9173 -7.0671 -2.3689 18 1 -0.5614 -7.2051 -2.3701 19 1 1.4762 -7.7188 -3.5806 20 1 1.4742 -7.7174 -1.1555 21 1 -0.3635 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5142 24 1 4.7973 -2.3999 -0.0003 25 1 6.7216 -1.4600 -1.2502 26 1 5.9402 0.1396 -1.2501 27 1 5.2000 -1.2128 -2.1399 28 1 5.9403 0.1400 1.2483 29 1 5.2004 -1.2120 2.1386 30 1 6.7217 -1.4595 1.2487 31 1 1.9941 -2.7826 -2.0070 32 1 1.4159 -5.0897 -4.3477 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299722007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:36 Heat of formation + Delta-G solvation = -18.299587 kcal Electronic energy + Delta-G solvation = -17071.090588 eV Core-core repulsion = 14226.554184 eV Total energy + Delta-G solvation = -2844.536404 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.85967 -40.11103 -36.99535 -36.10994 -35.49730 -33.36294 -31.85068 -29.76133 -28.08538 -27.53923 -25.02111 -23.83899 -21.60712 -20.37462 -20.01202 -18.77413 -18.42591 -17.30349 -16.71645 -16.44975 -15.90194 -15.20670 -15.12617 -14.49969 -14.37536 -14.19085 -14.10936 -13.79060 -13.59448 -13.04909 -12.97230 -12.53112 -12.49568 -12.30533 -12.25326 -12.13564 -11.81452 -11.60344 -10.98113 -10.76227 -10.32390 -10.15018 -8.54859 -6.05327 0.34238 0.89271 1.31497 1.42569 1.55483 1.73437 1.88857 2.27483 2.92332 3.07959 3.23924 3.33227 3.87634 3.94392 4.07808 4.22242 4.32169 4.45158 4.54440 4.66205 4.71248 4.77962 4.90130 4.90855 5.07944 5.09093 5.28938 5.31714 5.35002 5.87845 6.43370 6.98810 7.18116 7.37331 7.90803 8.61911 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.024866 B = 0.007699 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.742648 B = 3635.819166 C = 4139.368996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.040 3.960 3 N -0.371 5.371 4 O 0.099 5.901 5 C 0.024 3.976 6 C -0.017 4.017 7 C -0.141 4.141 8 C -0.141 4.141 9 C -0.251 4.251 10 C 0.516 3.484 11 O -0.625 6.625 12 N -0.542 5.542 13 C -0.340 4.340 14 H 0.087 0.913 15 C -0.004 4.004 16 N -0.911 5.911 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.268 1.268 20 H -0.269 1.269 21 H 0.094 0.906 22 H 0.102 0.898 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.396 0.604 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 7.358 1.784 9.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.122 4.122 3 N -0.079 5.079 4 O 0.038 5.962 5 C -0.040 4.040 6 C -0.037 4.037 7 C -0.199 4.199 8 C -0.198 4.198 9 C -0.258 4.258 10 C 0.302 3.698 11 O -0.514 6.514 12 N -0.175 5.175 13 C -0.468 4.468 14 H 0.104 0.896 15 C -0.206 4.206 16 N -0.550 5.550 17 Si 0.820 3.180 18 H -0.194 1.194 19 H -0.193 1.193 20 H -0.194 1.194 21 H 0.112 0.888 22 H 0.121 0.879 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.229 0.771 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.656 8.218 2.238 10.224 hybrid contribution -0.573 -1.445 -0.475 1.626 sum 5.083 6.773 1.763 8.649 Atomic orbital electron populations 1.20268 0.83794 1.04488 1.04484 1.25183 0.99797 0.86522 1.00667 1.73485 0.89503 1.23371 1.21537 1.84404 1.21076 1.22496 1.68185 1.25047 0.97533 0.83263 0.98125 1.20018 0.86284 0.97453 0.99953 1.21862 1.00331 1.03337 0.94321 1.21850 1.00294 1.03345 0.94284 1.22137 0.93853 0.95179 1.14656 1.16787 0.84421 0.84542 0.84065 1.90598 1.58967 1.69246 1.32559 1.41844 1.58754 1.10213 1.06678 1.19758 1.46673 0.85812 0.94607 0.89553 1.26150 0.95921 1.04798 0.93713 1.69684 1.47838 1.39276 0.98240 0.84870 0.78747 0.76155 0.78251 1.19437 1.19307 1.19361 0.88785 0.87905 0.90837 0.90105 0.88829 0.90334 0.93443 0.90365 0.93583 0.88694 0.77064 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.49 71.24 0.75 -1.52 16 2 C 0.04 1.52 7.59 45.16 0.34 1.86 16 3 N -0.37 -13.32 12.01 -44.74 -0.54 -13.85 16 4 O 0.10 3.35 11.06 76.74 0.85 4.20 16 5 C 0.02 0.85 6.06 25.50 0.15 1.01 16 6 C -0.02 -0.51 3.33 -11.54 -0.04 -0.55 16 7 C -0.14 -3.26 9.18 71.98 0.66 -2.60 16 8 C -0.14 -3.20 9.17 71.98 0.66 -2.54 16 9 C -0.25 -10.63 6.24 -18.75 -0.12 -10.74 16 10 C 0.52 26.22 7.25 86.63 0.63 26.85 16 11 O -0.63 -36.36 16.68 -4.15 -0.07 -36.43 16 12 N -0.54 -28.40 5.28 -310.05 -1.64 -30.03 16 13 C -0.34 -18.92 9.68 84.07 0.81 -18.10 16 14 H 0.09 5.09 7.15 -2.91 -0.02 5.06 16 15 C 0.00 -0.22 5.50 84.93 0.47 0.24 16 16 N -0.91 -47.91 13.05 21.67 0.28 -47.63 16 17 Si 1.00 41.26 29.55 68.60 2.03 43.28 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 21 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 22 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 23 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.08 2.78 7.71 -2.39 -0.02 2.77 16 25 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.40 20.24 7.88 -92.71 -0.73 19.51 16 32 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -65.72 287.77 5.64 -60.07 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.41 Total: 26.48 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 4.32 Total: -6.10 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -1.89 Total: -91.51 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: 0.78 Total: -32.23 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -65.72 5.64 -60.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299722007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.775 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds