Wall clock time and date at job start Sun Mar 29 2020 21:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86802 * 120.00068 * 2 1 4 4 H 1.48497 * 109.46976 * 239.99980 * 3 2 1 5 5 H 1.48500 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46904 * 119.99961 * 3 2 1 7 7 C 1.40029 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99692 * 179.97438 * 7 2 1 9 9 C 1.41318 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.40586 * 119.78020 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14494 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.67996 * 0.02562 * 11 10 9 13 13 C 1.39758 * 119.49331 * 359.97438 * 12 11 10 14 14 N 1.38826 * 119.58276 * 179.97438 * 13 12 11 15 15 C 1.46495 * 120.00130 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.47168 * 275.00305 * 15 14 13 17 17 O 1.42906 * 109.46752 * 294.99736 * 16 15 14 18 18 C 1.52995 * 109.47276 * 155.00046 * 15 14 13 19 19 O 1.42903 * 109.47154 * 64.99759 * 18 15 14 20 20 N 1.31981 * 120.82754 * 0.25747 * 13 12 11 21 21 H 0.97003 * 119.99594 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.43171 * 0.02562 * 10 9 7 23 23 H 1.08000 * 120.65429 * 179.97438 * 11 10 9 24 24 H 1.08004 * 120.25151 * 180.02562 * 12 11 10 25 25 H 0.96998 * 120.00029 * 180.02562 * 14 13 12 26 26 H 1.09007 * 109.47365 * 35.00019 * 15 14 13 27 27 H 1.08993 * 109.46955 * 55.00154 * 16 15 14 28 28 H 1.09000 * 109.47050 * 174.99983 * 16 15 14 29 29 H 0.96698 * 113.99404 * 180.02562 * 17 16 15 30 30 H 1.08995 * 109.47548 * 185.00025 * 18 15 14 31 31 H 1.08999 * 109.47097 * 305.00358 * 18 15 14 32 32 H 0.96699 * 114.00351 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.3009 -2.4365 0.0005 10 6 2.0084 -3.6514 0.0005 11 6 1.3034 -4.8418 0.0000 12 6 -0.0822 -4.7944 -0.0011 13 6 -0.7283 -3.5551 -0.0010 14 7 -2.1156 -3.5055 -0.0026 15 6 -2.8930 -4.7471 -0.0038 16 6 -3.0554 -5.2459 -1.4411 17 8 -3.8377 -4.3094 -2.1847 18 6 -4.2724 -4.4858 0.6042 19 8 -4.9990 -3.5841 -0.2331 20 7 -0.0360 -2.4314 -0.0051 21 1 -0.4850 0.8401 -0.0004 22 1 3.0884 -3.6554 0.0010 23 1 1.8221 -5.7890 -0.0004 24 1 -0.6579 -5.7082 -0.0011 25 1 -2.5703 -2.6486 -0.0030 26 1 -2.3730 -5.5020 0.5861 27 1 -2.0736 -5.3474 -1.9035 28 1 -3.5561 -6.2141 -1.4354 29 1 -3.9818 -4.5619 -3.1070 30 1 -4.8179 -5.4260 0.6852 31 1 -4.1555 -4.0472 1.5952 32 1 -5.8851 -3.3732 0.0916 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308899997.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:41 Heat of formation + Delta-G solvation = -54.125573 kcal Electronic energy + Delta-G solvation = -16975.431180 eV Core-core repulsion = 14129.341245 eV Total energy + Delta-G solvation = -2846.089935 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.60771 -37.37323 -35.65078 -34.41375 -33.12378 -30.66606 -29.82969 -27.64426 -25.65372 -25.08592 -21.58793 -21.20116 -19.71026 -17.73377 -17.19314 -16.51606 -16.08406 -15.46286 -14.75454 -14.51094 -14.30318 -13.68155 -13.15277 -13.04977 -12.97216 -12.45247 -12.02087 -11.74103 -11.54976 -11.14485 -10.95776 -10.71686 -10.53954 -10.39259 -9.93219 -9.73449 -9.47849 -9.41569 -8.81718 -7.86025 -7.42779 -6.41240 -6.25362 -4.42100 2.94115 3.14520 3.16948 3.29525 3.35294 4.03261 4.16001 4.54350 4.70907 4.91686 5.17264 5.44063 5.49730 5.64897 5.80155 5.93657 6.09491 6.19854 6.22573 6.61215 6.91913 6.94494 7.00983 7.32254 7.65437 7.85873 7.90807 7.97401 8.08494 8.24275 8.45553 8.81415 8.87349 9.20449 10.32422 10.47861 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.027726 B = 0.007205 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.625219 B = 3885.264276 C = 4560.857734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.435 4.435 8 H 0.082 0.918 9 C 0.293 3.707 10 C -0.319 4.319 11 C -0.031 4.031 12 C -0.376 4.376 13 C 0.414 3.586 14 N -0.720 5.720 15 C 0.167 3.833 16 C 0.063 3.937 17 O -0.537 6.537 18 C 0.074 3.926 19 O -0.538 6.538 20 N -0.531 5.531 21 H 0.270 0.730 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.403 0.597 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.359 0.641 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 -6.786 -0.131 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.155 4.155 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.467 4.467 8 H 0.100 0.900 9 C 0.166 3.834 10 C -0.342 4.342 11 C -0.055 4.055 12 C -0.402 4.402 13 C 0.173 3.827 14 N -0.356 5.356 15 C 0.059 3.941 16 C -0.017 4.017 17 O -0.339 6.339 18 C -0.005 4.005 19 O -0.340 6.340 20 N -0.252 5.252 21 H 0.082 0.918 22 H 0.112 0.888 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.238 0.762 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.203 0.797 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -8.023 -5.753 0.106 9.873 hybrid contribution 0.231 -0.287 -0.188 0.414 sum -7.792 -6.041 -0.082 9.860 Atomic orbital electron populations 1.70154 1.07080 1.27458 1.28693 1.26063 0.94860 1.00875 0.93711 0.86443 0.80084 0.80768 0.79765 1.19046 1.20360 1.19050 1.19545 0.94083 0.89434 1.43628 0.89981 1.18212 0.86973 0.91822 0.86437 1.21522 0.98346 0.93509 1.20848 1.20570 0.93425 0.96296 0.95249 1.20587 0.94608 0.95350 1.29626 1.18583 0.84454 0.90212 0.89412 1.44029 1.02174 1.06642 1.82722 1.20892 0.89989 0.89107 0.94108 1.22667 0.94450 0.90698 0.93873 1.86801 1.73819 1.48262 1.24981 1.22346 0.92171 0.92805 0.93207 1.86853 1.30603 1.66277 1.50281 1.68232 1.07555 1.24350 1.25112 0.91843 0.88798 0.89060 0.89398 0.76167 0.88564 0.93367 0.94719 0.79682 0.93550 0.93492 0.79233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.69 11.46 55.55 0.64 -19.05 16 2 C 0.07 1.86 5.50 -17.34 -0.10 1.76 16 3 Si 0.91 19.28 29.56 -169.99 -5.02 14.25 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.43 -12.13 9.14 -37.74 -0.34 -12.48 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.29 8.41 6.55 -85.00 -0.56 7.86 16 10 C -0.32 -8.30 9.83 -38.65 -0.38 -8.68 16 11 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 12 C -0.38 -8.80 8.84 -38.87 -0.34 -9.14 16 13 C 0.41 10.48 7.63 -155.31 -1.18 9.30 16 14 N -0.72 -15.53 5.17 -53.91 -0.28 -15.81 16 15 C 0.17 2.77 2.54 -67.93 -0.17 2.60 16 16 C 0.06 0.99 6.76 37.16 0.25 1.24 16 17 O -0.54 -8.78 11.17 -58.58 -0.65 -9.44 16 18 C 0.07 1.00 6.79 37.15 0.25 1.25 16 19 O -0.54 -7.80 10.95 -58.58 -0.64 -8.45 16 20 N -0.53 -15.25 7.89 -10.33 -0.08 -15.34 16 21 H 0.27 6.83 8.29 -40.82 -0.34 6.49 16 22 H 0.09 2.27 8.06 -52.49 -0.42 1.84 16 23 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 24 H 0.09 1.79 6.15 -52.48 -0.32 1.47 16 25 H 0.40 9.30 8.50 -40.82 -0.35 8.96 16 26 H 0.10 1.52 6.43 -51.93 -0.33 1.18 16 27 H 0.05 0.84 7.75 -51.93 -0.40 0.44 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.36 4.32 9.12 45.56 0.42 4.73 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.36 3.51 9.12 45.56 0.42 3.92 16 LS Contribution 274.99 15.07 4.14 4.14 Total: -1.00 -33.26 274.99 -7.11 -40.37 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -2.24 Total: 16.74 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.97 Total: -7.42 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.28 Total: -50.20 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -1.30 Total: -17.88 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.26 -7.11 -40.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308899997.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.759 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds