Wall clock time and date at job start Sun Mar 29 2020 21:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86802 * 120.00068 * 2 1 4 4 H 1.48497 * 109.46976 * 239.99980 * 3 2 1 5 5 H 1.48500 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46904 * 119.99961 * 3 2 1 7 7 C 1.40029 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99692 * 179.97438 * 7 2 1 9 9 C 1.41318 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.40586 * 119.78020 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14494 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.67996 * 0.02562 * 11 10 9 13 13 C 1.39758 * 119.49331 * 359.97438 * 12 11 10 14 14 N 1.38826 * 119.58276 * 179.97438 * 13 12 11 15 15 C 1.46495 * 120.00130 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.47168 * 275.00305 * 15 14 13 17 17 O 1.42906 * 109.46752 * 294.99736 * 16 15 14 18 18 C 1.52995 * 109.47276 * 155.00046 * 15 14 13 19 19 O 1.42903 * 109.47154 * 64.99759 * 18 15 14 20 20 N 1.31981 * 120.82754 * 0.25747 * 13 12 11 21 21 H 0.97003 * 119.99594 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.43171 * 0.02562 * 10 9 7 23 23 H 1.08000 * 120.65429 * 179.97438 * 11 10 9 24 24 H 1.08004 * 120.25151 * 180.02562 * 12 11 10 25 25 H 0.96998 * 120.00029 * 180.02562 * 14 13 12 26 26 H 1.09007 * 109.47365 * 35.00019 * 15 14 13 27 27 H 1.08993 * 109.46955 * 55.00154 * 16 15 14 28 28 H 1.09000 * 109.47050 * 174.99983 * 16 15 14 29 29 H 0.96698 * 113.99404 * 180.02562 * 17 16 15 30 30 H 1.08995 * 109.47548 * 185.00025 * 18 15 14 31 31 H 1.08999 * 109.47097 * 305.00358 * 18 15 14 32 32 H 0.96699 * 114.00351 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.3009 -2.4365 0.0005 10 6 2.0084 -3.6514 0.0005 11 6 1.3034 -4.8418 0.0000 12 6 -0.0822 -4.7944 -0.0011 13 6 -0.7283 -3.5551 -0.0010 14 7 -2.1156 -3.5055 -0.0026 15 6 -2.8930 -4.7471 -0.0038 16 6 -3.0554 -5.2459 -1.4411 17 8 -3.8377 -4.3094 -2.1847 18 6 -4.2724 -4.4858 0.6042 19 8 -4.9990 -3.5841 -0.2331 20 7 -0.0360 -2.4314 -0.0051 21 1 -0.4850 0.8401 -0.0004 22 1 3.0884 -3.6554 0.0010 23 1 1.8221 -5.7890 -0.0004 24 1 -0.6579 -5.7082 -0.0011 25 1 -2.5703 -2.6486 -0.0030 26 1 -2.3730 -5.5020 0.5861 27 1 -2.0736 -5.3474 -1.9035 28 1 -3.5561 -6.2141 -1.4354 29 1 -3.9818 -4.5619 -3.1070 30 1 -4.8179 -5.4260 0.6852 31 1 -4.1555 -4.0472 1.5952 32 1 -5.8851 -3.3732 0.0916 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308899997.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:41 Heat of formation + Delta-G solvation = -80.671466 kcal Electronic energy + Delta-G solvation = -16976.582296 eV Core-core repulsion = 14129.341245 eV Total energy + Delta-G solvation = -2847.241051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30779 -38.83642 -36.79410 -36.06269 -34.94915 -32.46468 -31.59801 -29.34940 -27.36451 -26.47512 -23.42115 -22.94415 -21.25686 -19.27310 -18.81682 -17.80382 -17.64384 -16.93349 -16.47135 -16.29822 -15.59568 -15.44109 -14.71912 -14.53105 -14.33340 -14.18415 -13.77686 -13.16989 -12.95487 -12.82556 -12.71631 -12.53584 -12.18703 -11.91511 -11.75520 -11.26044 -10.84213 -10.63767 -10.61406 -9.83104 -9.41161 -8.24180 -8.20606 -6.47560 1.08114 1.37030 1.40436 1.53228 1.59527 2.25167 2.63212 2.93461 3.47554 3.57398 3.97896 4.11298 4.35273 4.38279 4.51211 4.54646 4.60723 4.62685 4.88933 4.97282 5.01288 5.03766 5.16911 5.38798 5.73040 5.97664 6.10284 6.23776 6.59371 6.85608 6.95775 7.06313 7.10831 7.25237 8.37690 8.53355 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.027726 B = 0.007205 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.625219 B = 3885.264276 C = 4560.857734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.023 3.977 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.474 4.474 8 H 0.087 0.913 9 C 0.258 3.742 10 C -0.347 4.347 11 C -0.029 4.029 12 C -0.369 4.369 13 C 0.395 3.605 14 N -0.718 5.718 15 C 0.152 3.848 16 C 0.068 3.932 17 O -0.558 6.558 18 C 0.080 3.920 19 O -0.563 6.563 20 N -0.569 5.569 21 H 0.275 0.725 22 H 0.102 0.898 23 H 0.131 0.869 24 H 0.123 0.877 25 H 0.391 0.609 26 H 0.108 0.892 27 H 0.024 0.976 28 H 0.075 0.925 29 H 0.376 0.624 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -7.875 -0.046 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.198 4.198 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.506 4.506 8 H 0.105 0.895 9 C 0.130 3.870 10 C -0.370 4.370 11 C -0.053 4.053 12 C -0.395 4.395 13 C 0.154 3.846 14 N -0.351 5.351 15 C 0.046 3.954 16 C -0.012 4.012 17 O -0.363 6.363 18 C 0.001 3.999 19 O -0.368 6.368 20 N -0.292 5.292 21 H 0.085 0.915 22 H 0.120 0.880 23 H 0.149 0.851 24 H 0.140 0.860 25 H 0.224 0.776 26 H 0.125 0.875 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.223 0.777 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.746 -6.897 0.185 11.140 hybrid contribution 0.312 -0.107 -0.234 0.405 sum -8.434 -7.005 -0.049 10.964 Atomic orbital electron populations 1.70278 1.08845 1.28663 1.29701 1.27012 0.95731 1.04503 0.92575 0.85206 0.78570 0.75469 0.80034 1.18375 1.19395 1.18208 1.19925 0.94602 0.90550 1.45483 0.89494 1.18711 0.87699 0.93300 0.87241 1.21691 0.98968 0.93829 1.22547 1.21016 0.93728 0.97136 0.93392 1.20957 0.94947 0.95933 1.27657 1.19063 0.86000 0.90397 0.89173 1.44258 1.01025 1.08023 1.81802 1.21359 0.91221 0.87288 0.95540 1.22607 0.93744 0.92174 0.92664 1.86756 1.73758 1.49254 1.26529 1.22307 0.90817 0.94438 0.92331 1.86792 1.32231 1.66764 1.51046 1.68189 1.08005 1.26404 1.26612 0.91464 0.87996 0.85088 0.85965 0.77563 0.87475 0.95759 0.90722 0.77698 0.89725 0.93706 0.76893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -42.98 11.46 21.84 0.25 -42.73 16 2 C 0.02 1.26 5.50 85.29 0.47 1.73 16 3 Si 0.99 40.21 29.56 68.60 2.03 42.24 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.47 -27.33 9.14 23.46 0.21 -27.11 16 8 H 0.09 4.68 7.85 -2.91 -0.02 4.66 16 9 C 0.26 15.31 6.55 40.19 0.26 15.57 16 10 C -0.35 -18.28 9.83 22.87 0.22 -18.05 16 11 C -0.03 -1.31 10.15 22.39 0.23 -1.09 16 12 C -0.37 -16.79 8.84 22.73 0.20 -16.59 16 13 C 0.39 20.13 7.63 133.40 1.02 21.15 16 14 N -0.72 -30.88 5.17 -324.47 -1.68 -32.56 16 15 C 0.15 4.72 2.54 44.99 0.11 4.83 16 16 C 0.07 1.95 6.76 71.98 0.49 2.43 16 17 O -0.56 -17.33 11.17 -126.65 -1.41 -18.75 16 18 C 0.08 1.95 6.79 71.98 0.49 2.44 16 19 O -0.56 -15.25 10.95 -126.65 -1.39 -16.64 16 20 N -0.57 -33.73 7.89 -186.59 -1.47 -35.20 16 21 H 0.27 14.30 8.29 -92.71 -0.77 13.53 16 22 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 23 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 24 H 0.12 4.61 6.15 -2.91 -0.02 4.59 16 25 H 0.39 18.42 8.50 -92.71 -0.79 17.63 16 26 H 0.11 3.05 6.43 -2.38 -0.02 3.04 16 27 H 0.02 0.80 7.75 -2.39 -0.02 0.79 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.38 8.41 9.12 -74.06 -0.68 7.74 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.38 6.60 9.12 -74.06 -0.68 5.93 16 Total: -1.00 -74.18 274.99 -0.93 -75.11 By element: Atomic # 1 Polarization: 44.17 SS G_CDS: -0.97 Total: 43.20 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 3.71 Total: -14.69 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -2.90 Total: -110.49 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -2.80 Total: -35.38 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -74.18 -0.93 -75.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308899997.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.562 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds