Wall clock time and date at job start Sun Mar 29 2020 22:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47290 * 2 1 4 4 N 1.30258 * 125.61823 * 89.97535 * 3 2 1 5 5 C 1.34472 * 108.70247 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.16629 * 180.02562 * 5 4 3 7 7 C 1.34327 * 107.67005 * 0.02562 * 5 4 3 8 8 C 1.50701 * 126.44653 * 180.02562 * 7 5 4 9 9 N 1.46500 * 109.47104 * 89.98273 * 8 7 5 10 10 C 1.34778 * 120.00054 * 180.02562 * 9 8 7 11 11 O 1.21684 * 119.99983 * 359.97438 * 10 9 8 12 12 C 1.46373 * 119.99973 * 179.97438 * 10 9 8 13 13 H 1.08006 * 120.00249 * 0.02562 * 12 10 9 14 14 C 1.40052 * 120.00021 * 179.97438 * 12 10 9 15 15 N 1.30666 * 119.99818 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99897 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47313 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46702 * 120.00089 * 16 14 12 19 19 H 1.48499 * 109.47140 * 239.99804 * 16 14 12 20 20 O 1.33964 * 125.62261 * 270.00512 * 3 2 1 21 21 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47051 * 299.99833 * 1 2 3 23 23 H 1.08995 * 109.47275 * 59.99605 * 1 2 3 24 24 H 1.09000 * 109.47334 * 240.00520 * 2 1 3 25 25 H 1.09003 * 109.47256 * 119.99747 * 2 1 3 26 26 H 1.08998 * 109.47177 * 269.97578 * 6 5 4 27 27 H 1.09005 * 109.46916 * 29.98023 * 6 5 4 28 28 H 1.09004 * 109.46850 * 149.97548 * 6 5 4 29 29 H 1.08999 * 109.47037 * 209.97802 * 8 7 5 30 30 H 1.09001 * 109.47192 * 329.98291 * 8 7 5 31 31 H 0.97006 * 119.99800 * 359.97438 * 9 8 7 32 32 H 0.97000 * 120.00281 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7133 3.3493 0.6676 6 6 3.1149 4.4852 1.5728 7 6 2.7188 3.3661 -0.6755 8 6 3.1269 4.5200 -1.5548 9 7 4.5613 4.4334 -1.8397 10 6 5.1524 5.3662 -2.6124 11 8 4.4945 6.2800 -3.0737 12 6 6.5856 5.2800 -2.8966 13 1 7.1695 4.4686 -2.4875 14 6 7.1998 6.2490 -3.6999 15 7 6.4933 7.2302 -4.1953 16 14 9.0288 6.1385 -4.0632 17 1 9.5959 4.9426 -3.3899 18 1 9.2362 6.0255 -5.5293 19 1 9.7080 7.3593 -3.5599 20 8 2.2923 2.1565 -1.0890 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2428 5.1017 1.7910 27 1 3.5179 4.0837 2.5027 28 1 3.8744 5.0918 1.0795 29 1 2.5677 4.4799 -2.4896 30 1 2.9139 5.4590 -1.0439 31 1 5.0858 3.7051 -1.4716 32 1 6.9185 7.9012 -4.7520 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311990039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:26 Heat of formation + Delta-G solvation = -33.490911 kcal Electronic energy + Delta-G solvation = -16403.171056 eV Core-core repulsion = 13557.975907 eV Total energy + Delta-G solvation = -2845.195149 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.20097 -37.39360 -35.01994 -34.64459 -33.33313 -32.35803 -30.56409 -28.20311 -26.44218 -25.19380 -23.11680 -21.40552 -20.41792 -19.77092 -17.54961 -16.66719 -16.19301 -15.37284 -15.01329 -14.77594 -14.21475 -14.02676 -13.57135 -13.13608 -13.09559 -12.84111 -12.60076 -12.28504 -11.92590 -11.86064 -11.53295 -11.34818 -11.19230 -10.99184 -10.75069 -10.53536 -10.33992 -10.23241 -8.90504 -8.53273 -7.66885 -7.65916 -6.23913 -4.69711 1.54848 2.73258 2.79396 3.11083 3.19560 3.24211 3.99582 4.08684 4.52621 4.74827 4.89562 4.94765 4.97351 5.07415 5.19406 5.51341 5.53800 5.60023 5.74995 5.77234 5.86579 5.90996 6.02316 6.06431 6.23561 6.41896 6.52575 7.39302 7.79745 7.88157 7.94792 8.26292 8.97500 9.41388 10.52372 10.70321 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.040270 B = 0.004919 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.147847 B = 5691.151291 C = 5819.096919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.023 4.023 3 C 0.182 3.818 4 N -0.481 5.481 5 C -0.005 4.005 6 C -0.072 4.072 7 C -0.046 4.046 8 C 0.217 3.783 9 N -0.763 5.763 10 C 0.555 3.445 11 O -0.579 6.579 12 C -0.542 4.542 13 H 0.069 0.931 14 C 0.087 3.913 15 N -0.766 5.766 16 Si 0.909 3.091 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.275 1.275 20 O -0.195 6.195 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.383 0.617 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 -11.344 8.292 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 C -0.025 4.025 4 N -0.212 5.212 5 C -0.126 4.126 6 C -0.129 4.129 7 C -0.099 4.099 8 C 0.092 3.908 9 N -0.421 5.421 10 C 0.360 3.640 11 O -0.461 6.461 12 C -0.579 4.579 13 H 0.087 0.913 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.734 3.266 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.201 1.201 20 O -0.082 6.082 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.215 0.785 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.890 -10.701 8.386 15.719 hybrid contribution 1.185 -0.222 -0.691 1.390 sum -6.705 -10.922 7.695 14.949 Atomic orbital electron populations 1.21777 0.93303 1.02707 1.02974 1.20001 0.96678 0.84499 1.04975 1.26159 1.00602 0.96772 0.78999 1.70303 1.16912 1.03600 1.30360 1.21535 1.04163 0.94641 0.92217 1.20147 1.01775 0.93200 0.97818 1.23630 1.04795 0.86339 0.95144 1.19248 0.86031 0.89431 0.96078 1.46296 1.05732 1.32202 1.57853 1.18274 0.88477 0.80119 0.77121 1.90611 1.65780 1.35121 1.54628 1.20892 0.92017 1.11914 1.33094 0.91275 1.25711 0.99493 0.94084 0.93958 1.70021 1.36222 1.09257 1.24008 0.86288 0.82799 0.78926 0.78600 1.18753 1.20116 1.20081 1.84409 1.63751 1.22589 1.37429 0.91064 0.91851 0.92115 0.88984 0.87862 0.90902 0.90827 0.89953 0.91443 0.89681 0.78550 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.15 0.37 -0.85 16 2 C -0.02 -0.22 6.56 -27.89 -0.18 -0.41 16 3 C 0.18 2.66 7.60 -12.94 -0.10 2.57 16 4 N -0.48 -7.81 11.29 -7.36 -0.08 -7.90 16 5 C -0.01 -0.08 7.11 -82.82 -0.59 -0.67 16 6 C -0.07 -1.00 10.05 36.01 0.36 -0.64 16 7 C -0.05 -0.81 6.75 -35.69 -0.24 -1.05 16 8 C 0.22 4.30 5.83 -5.19 -0.03 4.27 16 9 N -0.76 -17.32 5.54 -62.90 -0.35 -17.66 16 10 C 0.56 15.70 7.75 -12.99 -0.10 15.59 16 11 O -0.58 -18.49 15.02 5.20 0.08 -18.41 16 12 C -0.54 -15.24 9.54 -35.63 -0.34 -15.58 16 13 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 14 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 15 N -0.77 -22.76 11.83 55.55 0.66 -22.11 16 16 Si 0.91 19.99 29.56 -169.99 -5.02 14.97 16 17 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 O -0.20 -3.32 10.78 5.36 0.06 -3.26 16 21 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.20 7.79 -51.93 -0.40 0.80 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.09 1.66 7.80 -51.93 -0.40 1.26 16 31 H 0.38 7.97 8.44 -40.82 -0.34 7.63 16 32 H 0.27 7.20 8.29 -40.82 -0.34 6.87 16 LS Contribution 287.22 15.07 4.33 4.33 Total: -1.00 -34.53 287.22 -5.36 -39.90 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.08 Total: 4.61 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.95 Total: 5.55 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.23 Total: -47.67 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.14 Total: -21.68 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.53 -5.36 -39.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311990039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.407 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds