Wall clock time and date at job start Sun Mar 29 2020 22:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47290 * 2 1 4 4 N 1.30258 * 125.61823 * 89.97535 * 3 2 1 5 5 C 1.34472 * 108.70247 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.16629 * 180.02562 * 5 4 3 7 7 C 1.34327 * 107.67005 * 0.02562 * 5 4 3 8 8 C 1.50701 * 126.44653 * 180.02562 * 7 5 4 9 9 N 1.46500 * 109.47104 * 89.98273 * 8 7 5 10 10 C 1.34778 * 120.00054 * 180.02562 * 9 8 7 11 11 O 1.21684 * 119.99983 * 359.97438 * 10 9 8 12 12 C 1.46373 * 119.99973 * 179.97438 * 10 9 8 13 13 H 1.08006 * 120.00249 * 0.02562 * 12 10 9 14 14 C 1.40052 * 120.00021 * 179.97438 * 12 10 9 15 15 N 1.30666 * 119.99818 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99897 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47313 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46702 * 120.00089 * 16 14 12 19 19 H 1.48499 * 109.47140 * 239.99804 * 16 14 12 20 20 O 1.33964 * 125.62261 * 270.00512 * 3 2 1 21 21 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47051 * 299.99833 * 1 2 3 23 23 H 1.08995 * 109.47275 * 59.99605 * 1 2 3 24 24 H 1.09000 * 109.47334 * 240.00520 * 2 1 3 25 25 H 1.09003 * 109.47256 * 119.99747 * 2 1 3 26 26 H 1.08998 * 109.47177 * 269.97578 * 6 5 4 27 27 H 1.09005 * 109.46916 * 29.98023 * 6 5 4 28 28 H 1.09004 * 109.46850 * 149.97548 * 6 5 4 29 29 H 1.08999 * 109.47037 * 209.97802 * 8 7 5 30 30 H 1.09001 * 109.47192 * 329.98291 * 8 7 5 31 31 H 0.97006 * 119.99800 * 359.97438 * 9 8 7 32 32 H 0.97000 * 120.00281 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7133 3.3493 0.6676 6 6 3.1149 4.4852 1.5728 7 6 2.7188 3.3661 -0.6755 8 6 3.1269 4.5200 -1.5548 9 7 4.5613 4.4334 -1.8397 10 6 5.1524 5.3662 -2.6124 11 8 4.4945 6.2800 -3.0737 12 6 6.5856 5.2800 -2.8966 13 1 7.1695 4.4686 -2.4875 14 6 7.1998 6.2490 -3.6999 15 7 6.4933 7.2302 -4.1953 16 14 9.0288 6.1385 -4.0632 17 1 9.5959 4.9426 -3.3899 18 1 9.2362 6.0255 -5.5293 19 1 9.7080 7.3593 -3.5599 20 8 2.2923 2.1565 -1.0890 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2428 5.1017 1.7910 27 1 3.5179 4.0837 2.5027 28 1 3.8744 5.0918 1.0795 29 1 2.5677 4.4799 -2.4896 30 1 2.9139 5.4590 -1.0439 31 1 5.0858 3.7051 -1.4716 32 1 6.9185 7.9012 -4.7520 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311990039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:26 Heat of formation + Delta-G solvation = -60.696119 kcal Electronic energy + Delta-G solvation = -16404.350762 eV Core-core repulsion = 13557.975907 eV Total energy + Delta-G solvation = -2846.374855 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.47026 -39.46900 -36.31793 -35.99193 -34.85251 -34.38038 -31.88816 -29.78285 -28.17623 -26.53603 -24.33442 -22.60842 -21.92995 -21.51386 -19.49618 -17.96651 -17.70694 -17.27158 -16.36016 -16.15975 -15.94227 -15.30935 -15.06950 -14.57035 -14.27546 -14.19224 -14.01532 -13.56256 -13.40707 -13.12364 -13.05654 -12.76182 -12.66734 -12.61436 -12.07534 -11.99009 -11.94329 -11.64608 -10.96397 -10.12699 -9.65442 -9.60743 -8.32116 -6.89628 0.25667 1.40400 1.40807 1.49433 1.56501 1.59334 2.24669 2.42984 2.91134 3.12168 3.53571 3.62099 3.77408 4.07709 4.20459 4.23099 4.35557 4.51121 4.64057 4.67616 4.76673 4.92054 4.95488 5.04435 5.07042 5.26159 5.30036 5.38144 5.80333 6.00584 6.19206 6.62973 6.83713 7.40322 8.40615 8.62600 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.040270 B = 0.004919 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.147847 B = 5691.151291 C = 5819.096919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.026 4.026 3 C 0.197 3.803 4 N -0.502 5.502 5 C 0.005 3.995 6 C -0.072 4.072 7 C -0.075 4.075 8 C 0.226 3.774 9 N -0.751 5.751 10 C 0.541 3.459 11 O -0.626 6.626 12 C -0.570 4.570 13 H 0.086 0.914 14 C 0.031 3.969 15 N -0.818 5.818 16 Si 0.999 3.001 17 H -0.249 1.249 18 H -0.268 1.268 19 H -0.266 1.266 20 O -0.209 6.209 21 H 0.101 0.899 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.111 0.889 25 H 0.123 0.877 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.393 0.607 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 -13.256 9.203 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.010 4.010 4 N -0.233 5.233 5 C -0.116 4.116 6 C -0.129 4.129 7 C -0.128 4.128 8 C 0.102 3.898 9 N -0.407 5.407 10 C 0.346 3.654 11 O -0.513 6.513 12 C -0.607 4.607 13 H 0.104 0.896 14 C -0.185 4.185 15 N -0.448 5.448 16 Si 0.819 3.181 17 H -0.172 1.172 18 H -0.193 1.193 19 H -0.191 1.191 20 O -0.097 6.097 21 H 0.120 0.880 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.129 0.871 25 H 0.141 0.859 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.226 0.774 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.034 -12.655 9.342 17.231 hybrid contribution 0.795 0.259 -0.905 1.232 sum -6.239 -12.397 8.437 16.242 Atomic orbital electron populations 1.21770 0.92019 1.04450 1.02068 1.20412 0.97591 0.81501 1.06870 1.27383 0.97742 0.97886 0.77994 1.70387 1.18371 1.03620 1.30872 1.21921 1.02324 0.95294 0.92023 1.20230 1.02271 0.92591 0.97794 1.23089 1.07991 0.86598 0.95077 1.19053 0.83974 0.90902 0.95882 1.45939 1.07166 1.31137 1.56434 1.18605 0.89064 0.80328 0.77376 1.90565 1.66852 1.37223 1.56706 1.21415 0.92457 1.12968 1.33834 0.89558 1.26957 1.05555 0.93017 0.92965 1.70171 1.39264 1.10440 1.24890 0.84946 0.74903 0.79616 0.78678 1.17197 1.19294 1.19116 1.84397 1.64231 1.22572 1.38521 0.88006 0.92701 0.93081 0.87090 0.85886 0.89191 0.89349 0.90952 0.92964 0.89718 0.77388 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.89 71.98 0.71 -1.28 16 2 C -0.03 -0.42 6.56 29.85 0.20 -0.23 16 3 C 0.20 5.46 7.60 88.34 0.67 6.14 16 4 N -0.50 -15.57 11.29 -291.98 -3.30 -18.87 16 5 C 0.00 0.15 7.11 41.26 0.29 0.44 16 6 C -0.07 -1.93 10.05 71.24 0.72 -1.21 16 7 C -0.08 -2.66 6.75 24.79 0.17 -2.49 16 8 C 0.23 9.26 5.83 85.63 0.50 9.76 16 9 N -0.75 -34.83 5.54 -471.15 -2.61 -37.44 16 10 C 0.54 31.45 7.75 86.36 0.67 32.12 16 11 O -0.63 -41.65 15.02 -4.30 -0.06 -41.72 16 12 C -0.57 -32.31 9.54 24.83 0.24 -32.08 16 13 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 14 C 0.03 1.69 5.50 85.31 0.47 2.16 16 15 N -0.82 -49.62 11.83 21.84 0.26 -49.36 16 16 Si 1.00 40.61 29.56 68.60 2.03 42.64 16 17 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 18 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 19 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 20 O -0.21 -7.03 10.78 -3.73 -0.04 -7.07 16 21 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 22 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.07 2.09 7.79 -2.38 -0.02 2.07 16 29 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 3.44 7.80 -2.39 -0.02 3.42 16 31 H 0.39 16.49 8.44 -92.70 -0.78 15.71 16 32 H 0.28 15.07 8.29 -92.71 -0.77 14.30 16 Total: -1.00 -76.13 287.22 1.26 -74.87 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.35 Total: 23.62 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 4.63 Total: 13.33 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -5.65 Total: -105.67 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.10 Total: -48.79 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -76.13 1.26 -74.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311990039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.174 kcal (2) G-P(sol) polarization free energy of solvation -76.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds