Wall clock time and date at job start Sun Mar 29 2020 22:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30168 * 126.80769 * 2 1 4 4 O 1.20924 * 111.61128 * 180.02562 * 3 2 1 5 5 C 1.34049 * 111.56097 * 359.75441 * 4 3 2 6 6 C 1.50699 * 126.77398 * 180.28681 * 5 4 3 7 7 C 1.35448 * 106.44818 * 0.38703 * 5 4 3 8 8 C 1.50700 * 128.00788 * 179.90593 * 7 5 4 9 9 C 1.50698 * 109.47250 * 269.68226 * 8 7 5 10 10 O 1.21294 * 120.00025 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99913 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00044 * 359.97438 * 11 9 8 13 13 C 1.37094 * 119.99967 * 179.97438 * 11 9 8 14 14 H 1.08004 * 119.99896 * 22.40865 * 13 11 9 15 15 C 1.38946 * 120.00011 * 202.40723 * 13 11 9 16 16 N 1.31411 * 120.00265 * 11.58926 * 15 13 11 17 17 Si 1.86804 * 120.00146 * 191.59319 * 15 13 11 18 18 H 1.48498 * 109.47258 * 89.99838 * 17 15 13 19 19 H 1.48496 * 109.47340 * 210.00061 * 17 15 13 20 20 H 1.48501 * 109.47069 * 329.99770 * 17 15 13 21 21 H 1.09005 * 109.46857 * 269.97304 * 1 2 3 22 22 H 1.09003 * 109.47017 * 29.97081 * 1 2 3 23 23 H 1.08997 * 109.47414 * 149.98015 * 1 2 3 24 24 H 1.09000 * 109.47787 * 270.11829 * 6 5 4 25 25 H 1.09007 * 109.47227 * 30.11851 * 6 5 4 26 26 H 1.08996 * 109.47069 * 150.11420 * 6 5 4 27 27 H 1.08999 * 109.47132 * 149.67818 * 8 7 5 28 28 H 1.08997 * 109.46825 * 29.68148 * 8 7 5 29 29 H 1.08996 * 109.47577 * 92.15711 * 12 11 9 30 30 H 1.09000 * 109.47595 * 212.16501 * 12 11 9 31 31 H 1.09001 * 109.47293 * 332.16332 * 12 11 9 32 32 H 0.96999 * 120.00451 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4538 0.7252 -0.0005 5 6 3.6024 -0.6070 0.0044 6 6 4.9021 -1.3698 0.0115 7 6 2.3539 -1.1322 -0.0005 8 6 1.9589 -2.5865 0.0001 9 6 1.8262 -3.0715 -1.4205 10 8 2.0316 -2.3109 -2.3428 11 7 1.4782 -4.3502 -1.6663 12 6 1.2296 -5.2687 -0.5525 13 6 1.3569 -4.7913 -2.9587 14 1 1.8669 -4.2719 -3.7566 15 6 0.5780 -5.9065 -3.2419 16 7 -0.2197 -6.4016 -2.3225 17 14 0.6648 -6.7022 -4.9298 18 1 1.7199 -7.7472 -4.9307 19 1 -0.6455 -7.3215 -5.2531 20 1 0.9892 -5.6704 -5.9474 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3634 -0.8898 -0.5141 24 1 5.2202 -1.5553 -1.0144 25 1 5.6636 -0.7853 0.5279 26 1 4.7626 -2.3204 0.5262 27 1 1.0053 -2.7038 0.5147 28 1 2.7230 -3.1703 0.5134 29 1 0.1693 -5.2554 -0.3003 30 1 1.5217 -6.2782 -0.8418 31 1 1.8128 -4.9559 0.3136 32 1 -0.7638 -7.1799 -2.5203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330419527.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:59 Heat of formation + Delta-G solvation = 24.961083 kcal Electronic energy + Delta-G solvation = -17127.911854 eV Core-core repulsion = 14285.251374 eV Total energy + Delta-G solvation = -2842.660480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.49572 -38.50728 -35.16569 -34.37129 -33.26879 -31.67382 -29.42972 -28.29777 -26.98901 -26.09432 -24.28355 -21.64046 -19.89481 -18.79322 -17.32146 -16.86985 -16.48422 -15.92194 -14.74268 -14.47483 -14.20266 -13.78214 -13.35734 -13.18020 -12.88660 -12.63104 -12.42131 -12.21688 -12.03880 -11.83922 -11.53437 -11.25828 -11.15828 -10.90453 -10.58544 -10.37170 -10.24097 -9.46666 -9.04743 -8.83338 -8.31652 -7.70528 -6.32957 -3.89726 1.85889 2.61127 3.14780 3.23891 3.29557 3.48038 3.86615 4.13342 4.55227 4.81390 4.93692 5.08298 5.24072 5.33970 5.54621 5.60335 5.68879 5.73548 5.88432 5.91422 5.95627 6.04852 6.18499 6.30146 6.33638 6.55826 6.84776 7.19625 7.55043 8.11325 8.47189 8.66181 9.17720 9.40629 9.96799 10.70665 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036940 B = 0.006449 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.809409 B = 4340.948876 C = 4474.253184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.033 3.967 3 N -0.377 5.377 4 O 0.089 5.911 5 C -0.033 4.033 6 C -0.068 4.068 7 C -0.160 4.160 8 C -0.057 4.057 9 C 0.448 3.552 10 O -0.582 6.582 11 N -0.448 5.448 12 C 0.111 3.889 13 C -0.305 4.305 14 H 0.098 0.902 15 C 0.030 3.970 16 N -0.884 5.884 17 Si 0.926 3.074 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 4.011 8.026 10.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 N -0.085 5.085 4 O 0.025 5.975 5 C -0.097 4.097 6 C -0.126 4.126 7 C -0.164 4.164 8 C -0.098 4.098 9 C 0.236 3.764 10 O -0.466 6.466 11 N -0.167 5.167 12 C -0.032 4.032 13 C -0.433 4.433 14 H 0.116 0.884 15 C -0.173 4.173 16 N -0.524 5.524 17 Si 0.753 3.247 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.321 5.515 7.573 10.317 hybrid contribution -0.283 -1.441 -0.755 1.652 sum 4.038 4.074 6.818 8.910 Atomic orbital electron populations 1.20140 0.86337 1.04060 1.02654 1.23324 0.98727 0.88543 1.01987 1.73719 0.89357 1.24038 1.21379 1.84708 1.21629 1.22556 1.68599 1.24047 0.98155 0.83619 1.03831 1.20262 0.89925 0.98185 1.04184 1.20430 0.91570 0.96625 1.07764 1.19902 1.02760 0.89170 0.97921 1.19868 0.84757 0.82360 0.89438 1.90539 1.55625 1.54576 1.45906 1.43587 1.59291 1.07137 1.06703 1.21524 1.00193 0.94707 0.86825 1.19660 1.27936 1.11200 0.84487 0.88425 1.25326 0.94684 0.97950 0.99316 1.69989 1.24236 1.24004 1.34180 0.85927 0.77499 0.79261 0.82051 1.20367 1.20934 1.19404 0.90573 0.90847 0.89733 0.89369 0.90399 0.89388 0.89030 0.89283 0.92347 0.91232 0.95550 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.39 36.00 0.37 -0.76 16 2 C 0.03 0.60 7.33 -82.10 -0.60 0.00 16 3 N -0.38 -7.08 12.07 33.42 0.40 -6.68 16 4 O 0.09 1.56 11.20 17.15 0.19 1.76 16 5 C -0.03 -0.55 7.49 -35.30 -0.26 -0.82 16 6 C -0.07 -0.83 10.30 36.01 0.37 -0.46 16 7 C -0.16 -2.91 4.82 -104.42 -0.50 -3.41 16 8 C -0.06 -1.02 4.55 -29.04 -0.13 -1.15 16 9 C 0.45 10.65 7.62 -10.99 -0.08 10.57 16 10 O -0.58 -16.14 15.73 5.55 0.09 -16.05 16 11 N -0.45 -11.19 3.02 -122.20 -0.37 -11.56 16 12 C 0.11 2.38 8.52 59.84 0.51 2.89 16 13 C -0.30 -8.41 9.29 -14.94 -0.14 -8.55 16 14 H 0.10 2.84 7.41 -52.48 -0.39 2.45 16 15 C 0.03 0.79 5.11 -17.47 -0.09 0.70 16 16 N -0.88 -23.18 10.62 55.50 0.59 -22.59 16 17 Si 0.93 20.62 29.57 -169.99 -5.03 15.59 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 24 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 0.95 7.43 -51.93 -0.39 0.56 16 27 H 0.09 1.50 8.11 -51.93 -0.42 1.08 16 28 H 0.09 1.35 6.70 -51.93 -0.35 1.00 16 29 H 0.06 1.30 7.54 -51.93 -0.39 0.90 16 30 H 0.07 1.57 7.06 -51.93 -0.37 1.20 16 31 H 0.03 0.45 6.36 -51.93 -0.33 0.12 16 32 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 278.56 15.07 4.20 4.20 Total: -1.00 -32.37 278.56 -4.36 -36.73 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -3.88 Total: -0.41 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.56 Total: -1.00 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.62 Total: -40.82 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.28 Total: -14.30 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.37 -4.36 -36.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330419527.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.691 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds