Wall clock time and date at job start Sun Mar 29 2020 22:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30168 * 126.80769 * 2 1 4 4 O 1.20924 * 111.61128 * 180.02562 * 3 2 1 5 5 C 1.34049 * 111.56097 * 359.75441 * 4 3 2 6 6 C 1.50699 * 126.77398 * 180.28681 * 5 4 3 7 7 C 1.35448 * 106.44818 * 0.38703 * 5 4 3 8 8 C 1.50700 * 128.00788 * 179.90593 * 7 5 4 9 9 C 1.50698 * 109.47250 * 269.68226 * 8 7 5 10 10 O 1.21294 * 120.00025 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99913 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00044 * 359.97438 * 11 9 8 13 13 C 1.37094 * 119.99967 * 179.97438 * 11 9 8 14 14 H 1.08004 * 119.99896 * 22.40865 * 13 11 9 15 15 C 1.38946 * 120.00011 * 202.40723 * 13 11 9 16 16 N 1.31411 * 120.00265 * 11.58926 * 15 13 11 17 17 Si 1.86804 * 120.00146 * 191.59319 * 15 13 11 18 18 H 1.48498 * 109.47258 * 89.99838 * 17 15 13 19 19 H 1.48496 * 109.47340 * 210.00061 * 17 15 13 20 20 H 1.48501 * 109.47069 * 329.99770 * 17 15 13 21 21 H 1.09005 * 109.46857 * 269.97304 * 1 2 3 22 22 H 1.09003 * 109.47017 * 29.97081 * 1 2 3 23 23 H 1.08997 * 109.47414 * 149.98015 * 1 2 3 24 24 H 1.09000 * 109.47787 * 270.11829 * 6 5 4 25 25 H 1.09007 * 109.47227 * 30.11851 * 6 5 4 26 26 H 1.08996 * 109.47069 * 150.11420 * 6 5 4 27 27 H 1.08999 * 109.47132 * 149.67818 * 8 7 5 28 28 H 1.08997 * 109.46825 * 29.68148 * 8 7 5 29 29 H 1.08996 * 109.47577 * 92.15711 * 12 11 9 30 30 H 1.09000 * 109.47595 * 212.16501 * 12 11 9 31 31 H 1.09001 * 109.47293 * 332.16332 * 12 11 9 32 32 H 0.96999 * 120.00451 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4538 0.7252 -0.0005 5 6 3.6024 -0.6070 0.0044 6 6 4.9021 -1.3698 0.0115 7 6 2.3539 -1.1322 -0.0005 8 6 1.9589 -2.5865 0.0001 9 6 1.8262 -3.0715 -1.4205 10 8 2.0316 -2.3109 -2.3428 11 7 1.4782 -4.3502 -1.6663 12 6 1.2296 -5.2687 -0.5525 13 6 1.3569 -4.7913 -2.9587 14 1 1.8669 -4.2719 -3.7566 15 6 0.5780 -5.9065 -3.2419 16 7 -0.2197 -6.4016 -2.3225 17 14 0.6648 -6.7022 -4.9298 18 1 1.7199 -7.7472 -4.9307 19 1 -0.6455 -7.3215 -5.2531 20 1 0.9892 -5.6704 -5.9474 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3634 -0.8898 -0.5141 24 1 5.2202 -1.5553 -1.0144 25 1 5.6636 -0.7853 0.5279 26 1 4.7626 -2.3204 0.5262 27 1 1.0053 -2.7038 0.5147 28 1 2.7230 -3.1703 0.5134 29 1 0.1693 -5.2554 -0.3003 30 1 1.5217 -6.2782 -0.8418 31 1 1.8128 -4.9559 0.3136 32 1 -0.7638 -7.1799 -2.5203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330419527.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:59 Heat of formation + Delta-G solvation = 4.143238 kcal Electronic energy + Delta-G solvation = -17128.814584 eV Core-core repulsion = 14285.251374 eV Total energy + Delta-G solvation = -2843.563210 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.84123 -40.34790 -36.84708 -36.01207 -34.53927 -33.63412 -30.84726 -29.57252 -28.39716 -27.75004 -26.13634 -23.11855 -21.24219 -20.46969 -18.88396 -18.66042 -17.86848 -17.70830 -16.51111 -16.18777 -15.92890 -15.20314 -14.75983 -14.31876 -14.25629 -13.93242 -13.84104 -13.68398 -13.42818 -13.31447 -13.10540 -13.00298 -12.78389 -12.61982 -12.28092 -12.14570 -11.85282 -10.99813 -10.83995 -10.42464 -9.94643 -9.66493 -8.31049 -5.96277 0.54777 1.23401 1.37436 1.41752 1.53063 2.05628 2.24218 2.30167 3.10450 3.16647 3.28883 3.59674 3.90069 4.05006 4.23337 4.39506 4.47976 4.61520 4.65354 4.67366 4.71308 4.82631 4.86524 4.97300 5.11506 5.15724 5.29785 5.45836 5.46579 6.11913 6.51411 7.20032 7.33306 7.50677 8.07044 8.70011 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036940 B = 0.006449 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.809409 B = 4340.948876 C = 4474.253184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.019 3.981 3 N -0.399 5.399 4 O 0.082 5.918 5 C -0.024 4.024 6 C -0.070 4.070 7 C -0.191 4.191 8 C -0.041 4.041 9 C 0.443 3.557 10 O -0.631 6.631 11 N -0.463 5.463 12 C 0.119 3.881 13 C -0.342 4.342 14 H 0.068 0.932 15 C -0.001 4.001 16 N -0.896 5.896 17 Si 0.985 3.015 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.280 1.280 21 H 0.106 0.894 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.055 3.232 9.281 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.139 4.139 3 N -0.109 5.109 4 O 0.021 5.979 5 C -0.087 4.087 6 C -0.127 4.127 7 C -0.196 4.196 8 C -0.081 4.081 9 C 0.233 3.767 10 O -0.519 6.519 11 N -0.182 5.182 12 C -0.024 4.024 13 C -0.470 4.470 14 H 0.086 0.914 15 C -0.202 4.202 16 N -0.534 5.534 17 Si 0.809 3.191 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.205 1.205 21 H 0.125 0.875 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.143 0.857 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.811 4.714 8.865 11.134 hybrid contribution -0.420 -1.166 -1.141 1.684 sum 4.391 3.548 7.724 9.567 Atomic orbital electron populations 1.20216 0.84837 1.03513 1.04472 1.23843 1.00046 0.88680 1.01363 1.73701 0.89813 1.24638 1.22737 1.84677 1.21335 1.23292 1.68605 1.24817 0.99463 0.83216 1.01240 1.20512 0.88678 0.99040 1.04463 1.20610 0.92380 0.96735 1.09846 1.19802 1.05002 0.89362 0.93930 1.20836 0.82882 0.81516 0.91504 1.90502 1.57356 1.55775 1.48235 1.43840 1.59384 1.08293 1.06686 1.21510 1.00307 0.93407 0.87182 1.19567 1.29461 1.12463 0.85523 0.91418 1.26002 0.93892 0.97694 1.02658 1.70056 1.23950 1.24058 1.35376 0.85059 0.78109 0.78215 0.77723 1.18905 1.19896 1.20499 0.87524 0.90429 0.91135 0.90017 0.87181 0.87406 0.87137 0.85738 0.93489 0.92922 0.90669 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.16 10.39 71.24 0.74 -1.42 16 2 C 0.02 0.69 7.33 43.58 0.32 1.01 16 3 N -0.40 -14.78 12.07 -49.54 -0.60 -15.38 16 4 O 0.08 2.83 11.20 71.55 0.80 3.63 16 5 C -0.02 -0.75 7.49 25.04 0.19 -0.57 16 6 C -0.07 -1.52 10.30 71.24 0.73 -0.78 16 7 C -0.19 -6.69 4.82 -19.73 -0.10 -6.79 16 8 C -0.04 -1.37 4.55 29.10 0.13 -1.24 16 9 C 0.44 20.90 7.62 87.66 0.67 21.57 16 10 O -0.63 -35.74 15.73 -3.07 -0.05 -35.78 16 11 N -0.46 -23.06 3.02 -658.92 -1.99 -25.05 16 12 C 0.12 4.89 8.52 127.77 1.09 5.98 16 13 C -0.34 -19.21 9.29 84.04 0.78 -18.43 16 14 H 0.07 4.12 7.41 -2.91 -0.02 4.10 16 15 C 0.00 -0.04 5.11 84.93 0.43 0.40 16 16 N -0.90 -46.42 10.62 21.66 0.23 -46.19 16 17 Si 0.98 42.16 29.57 68.60 2.03 44.19 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 22 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 23 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.11 1.92 7.43 -2.39 -0.02 1.90 16 27 H 0.11 3.31 8.11 -2.39 -0.02 3.29 16 28 H 0.12 3.26 6.70 -2.39 -0.02 3.24 16 29 H 0.05 2.02 7.54 -2.39 -0.02 2.00 16 30 H 0.05 2.32 7.06 -2.39 -0.02 2.30 16 31 H 0.07 2.31 6.36 -2.39 -0.02 2.29 16 32 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 Total: -1.00 -71.50 278.56 6.54 -64.96 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.13 Total: 9.89 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 4.99 Total: -0.27 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -2.36 Total: -86.61 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: 0.75 Total: -32.15 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -71.50 6.54 -64.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330419527.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.099 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds