Wall clock time and date at job start Sun Mar 29 2020 22:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47213 * 2 1 4 4 N 1.30180 * 126.80165 * 85.02375 * 3 2 1 5 5 O 1.20918 * 111.60807 * 179.97438 * 4 3 2 6 6 C 1.34047 * 111.56591 * 359.97438 * 5 4 3 7 7 C 1.35457 * 106.44351 * 359.75630 * 6 5 4 8 8 C 1.50701 * 128.00415 * 180.23547 * 7 6 5 9 9 N 1.46499 * 109.47338 * 5.03149 * 8 7 6 10 10 C 1.46497 * 120.00195 * 265.07933 * 9 8 7 11 11 C 1.34777 * 119.99932 * 85.07550 * 9 8 7 12 12 O 1.21689 * 119.99803 * 0.02562 * 11 9 8 13 13 C 1.46376 * 120.00151 * 180.02562 * 11 9 8 14 14 H 1.07994 * 119.99896 * 359.97438 * 13 11 9 15 15 C 1.40046 * 120.00003 * 180.02562 * 13 11 9 16 16 N 1.30672 * 120.00064 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00006 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47248 * 59.99708 * 17 15 13 19 19 H 1.48507 * 109.47126 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46888 * 299.99386 * 17 15 13 21 21 H 1.08998 * 109.47316 * 184.99083 * 1 2 3 22 22 H 1.09008 * 109.47041 * 304.98837 * 1 2 3 23 23 H 1.08993 * 109.47534 * 64.98598 * 1 2 3 24 24 H 1.09003 * 109.46335 * 240.00486 * 2 1 3 25 25 H 1.08998 * 109.47506 * 120.00659 * 2 1 3 26 26 H 1.07995 * 126.77448 * 180.02562 * 6 5 4 27 27 H 1.08994 * 109.47019 * 125.03365 * 8 7 6 28 28 H 1.09005 * 109.46863 * 245.03641 * 8 7 6 29 29 H 1.08994 * 109.47456 * 95.28910 * 10 9 8 30 30 H 1.09002 * 109.47006 * 215.28893 * 10 9 8 31 31 H 1.08997 * 109.47232 * 335.28505 * 10 9 8 32 32 H 0.97008 * 120.00221 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2071 2.1862 1.0384 5 8 2.6224 3.2770 0.7228 6 6 2.7819 3.3784 -0.6043 7 6 2.4139 2.1842 -1.1271 8 6 2.4089 1.7672 -2.5753 9 7 2.9919 2.8341 -3.3927 10 6 2.1225 3.8227 -4.0353 11 6 4.3281 2.9060 -3.5535 12 8 5.0502 2.0845 -3.0201 13 6 4.9107 3.9723 -4.3698 14 1 4.2698 4.7010 -4.8435 15 6 6.2991 4.0467 -4.5373 16 7 7.0745 3.1646 -3.9645 17 14 7.0425 5.4069 -5.5796 18 1 6.6794 6.7266 -5.0035 19 1 8.5207 5.2650 -5.5976 20 1 6.5186 5.3108 -6.9658 21 1 -0.3634 -1.0237 0.0894 22 1 -0.3633 0.5893 0.8420 23 1 -0.3634 0.4345 -0.9312 24 1 1.8932 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.1380 4.2405 -1.1487 27 1 2.9964 0.8568 -2.6932 28 1 1.3838 1.5824 -2.8966 29 1 2.0504 4.7082 -3.4038 30 1 2.5406 4.0998 -5.0030 31 1 1.1297 3.3958 -4.1772 32 1 8.0363 3.2163 -4.0802 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330783889.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:52 Heat of formation + Delta-G solvation = -2.828813 kcal Electronic energy + Delta-G solvation = -17064.757415 eV Core-core repulsion = 14220.891874 eV Total energy + Delta-G solvation = -2843.865541 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.84676 -39.73226 -36.87061 -35.71723 -34.56914 -33.08749 -31.97165 -29.47248 -27.83826 -26.30844 -25.35681 -22.97508 -21.79335 -20.83298 -18.59895 -18.53519 -18.23597 -17.57864 -16.28911 -16.13684 -15.92665 -15.37157 -15.09499 -14.44144 -14.35533 -13.70438 -13.49685 -13.38347 -13.31536 -13.07383 -13.00487 -12.68543 -12.55814 -12.43315 -12.17226 -12.05773 -11.81454 -10.89917 -10.82537 -10.23069 -9.78043 -9.18697 -8.26647 -6.82116 0.55390 1.28427 1.42289 1.44541 1.56047 2.24146 2.29709 2.50361 2.79225 3.22986 3.63920 3.66862 4.13697 4.20199 4.34859 4.36854 4.47502 4.51215 4.62541 4.80401 4.84759 4.97793 4.99752 5.09917 5.13314 5.14576 5.33858 5.38952 5.75889 6.15708 6.39144 6.90789 7.27034 7.42254 8.49896 8.69717 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038301 B = 0.006428 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.876993 B = 4355.155925 C = 4463.754487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C 0.025 3.975 4 N -0.394 5.394 5 O 0.076 5.924 6 C -0.047 4.047 7 C -0.211 4.211 8 C 0.206 3.794 9 N -0.648 5.648 10 C 0.098 3.902 11 C 0.542 3.458 12 O -0.626 6.626 13 C -0.566 4.566 14 H 0.095 0.905 15 C 0.031 3.969 16 N -0.822 5.822 17 Si 0.991 3.009 18 H -0.254 1.254 19 H -0.280 1.280 20 H -0.253 1.253 21 H 0.088 0.912 22 H 0.046 0.954 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.212 0.788 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.537 -0.001 1.224 12.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.085 4.085 3 C -0.135 4.135 4 N -0.103 5.103 5 O 0.015 5.985 6 C -0.128 4.128 7 C -0.217 4.217 8 C 0.081 3.919 9 N -0.385 5.385 10 C -0.044 4.044 11 C 0.348 3.652 12 O -0.512 6.512 13 C -0.602 4.602 14 H 0.113 0.887 15 C -0.185 4.185 16 N -0.452 5.452 17 Si 0.811 3.189 18 H -0.178 1.178 19 H -0.205 1.205 20 H -0.177 1.177 21 H 0.106 0.894 22 H 0.066 0.934 23 H 0.082 0.918 24 H 0.112 0.888 25 H 0.101 0.899 26 H 0.229 0.771 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.167 -0.636 2.847 12.512 hybrid contribution 0.929 0.527 -1.058 1.503 sum -11.238 -0.109 1.789 11.380 Atomic orbital electron populations 1.21668 0.92034 1.03460 1.02194 1.20111 0.97880 0.86207 1.04319 1.23938 1.01462 1.00220 0.87835 1.73697 1.18009 0.93520 1.25031 1.84710 1.62362 1.27523 1.23904 1.25785 1.02280 1.02029 0.82692 1.22140 1.06040 0.94203 0.99281 1.19323 0.99055 0.90745 0.82735 1.47853 1.06563 1.31125 1.52912 1.21631 0.93812 0.91414 0.97582 1.18596 0.80065 0.85573 0.80991 1.90580 1.60700 1.45524 1.54436 1.21505 0.92753 1.13438 1.32537 0.88712 1.26939 0.97708 0.98320 0.95501 1.70193 1.05173 1.33509 1.36302 0.85165 0.76848 0.77958 0.78963 1.17776 1.20494 1.17719 0.89362 0.93438 0.91829 0.88824 0.89921 0.77136 0.92246 0.86781 0.93744 0.91815 0.89840 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 71.98 0.71 -1.90 16 2 C -0.05 -1.19 6.45 29.85 0.19 -1.00 16 3 C 0.03 0.87 6.58 43.58 0.29 1.15 16 4 N -0.39 -14.60 12.07 -49.55 -0.60 -15.20 16 5 O 0.08 2.85 11.20 71.57 0.80 3.65 16 6 C -0.05 -1.77 11.62 67.18 0.78 -0.98 16 7 C -0.21 -7.78 6.22 -19.73 -0.12 -7.90 16 8 C 0.21 7.46 5.87 85.63 0.50 7.96 16 9 N -0.65 -26.92 2.32 -856.29 -1.99 -28.91 16 10 C 0.10 3.08 10.04 127.77 1.28 4.36 16 11 C 0.54 29.64 7.52 86.36 0.65 30.29 16 12 O -0.63 -40.50 14.68 -4.31 -0.06 -40.57 16 13 C -0.57 -30.27 8.73 24.83 0.22 -30.05 16 14 H 0.09 4.46 6.11 -2.91 -0.02 4.44 16 15 C 0.03 1.65 5.50 85.30 0.47 2.12 16 16 N -0.82 -49.46 11.83 21.83 0.26 -49.20 16 17 Si 0.99 39.64 29.56 68.60 2.03 41.66 16 18 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 19 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 20 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 21 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.09 2.22 8.08 -2.39 -0.02 2.21 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.21 7.76 7.95 -2.91 -0.02 7.74 16 27 H 0.06 2.46 7.57 -2.39 -0.02 2.44 16 28 H 0.11 3.09 7.79 -2.38 -0.02 3.07 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 2.08 6.41 -2.39 -0.02 2.07 16 31 H 0.08 1.97 7.79 -2.39 -0.02 1.95 16 32 H 0.27 15.01 8.29 -92.70 -0.77 14.24 16 Total: -1.00 -74.19 282.12 6.53 -67.65 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.12 Total: 16.86 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 4.97 Total: 4.04 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -2.33 Total: -93.31 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: 0.74 Total: -36.91 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.66 kcal Total: -74.19 6.53 -67.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330783889.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.824 kcal (2) G-P(sol) polarization free energy of solvation -74.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds