Wall clock time and date at job start Sun Mar 29 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47483 * 2 1 4 4 N 1.29989 * 125.40121 * 90.34022 * 3 2 1 5 5 C 1.35973 * 108.50203 * 180.13025 * 4 3 2 6 6 C 1.47713 * 126.42328 * 179.82472 * 5 4 3 7 7 O 1.35264 * 119.99977 * 359.68811 * 6 5 4 8 8 N 1.30163 * 120.00022 * 179.68996 * 6 5 4 9 9 C 1.46499 * 119.99884 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47197 * 359.97438 * 9 8 6 11 11 C 1.53005 * 109.46437 * 239.99556 * 9 8 6 12 12 C 1.50701 * 109.47260 * 120.00041 * 9 8 6 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27562 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.35897 * 107.14991 * 359.56166 * 5 4 3 21 21 O 1.34024 * 125.39676 * 269.97460 * 3 2 1 22 22 H 1.09004 * 109.46939 * 59.99885 * 1 2 3 23 23 H 1.08994 * 109.47603 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46651 * 300.00595 * 1 2 3 25 25 H 1.09000 * 109.47127 * 239.99622 * 2 1 3 26 26 H 1.08995 * 109.46956 * 119.99987 * 2 1 3 27 27 H 0.96694 * 113.99746 * 0.02562 * 7 6 5 28 28 H 1.08996 * 109.47069 * 60.00420 * 11 9 8 29 29 H 1.09004 * 109.46658 * 179.97438 * 11 9 8 30 30 H 1.08995 * 109.47438 * 299.99560 * 11 9 8 31 31 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 32 32 H 1.08006 * 126.51408 * 180.30027 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2894 2.1286 1.0595 5 6 2.7182 3.3570 0.6643 6 6 3.1137 4.4737 1.5466 7 8 3.0611 4.3254 2.8901 8 7 3.5127 5.6004 1.0313 9 6 3.9055 6.7077 1.9064 10 1 3.7977 6.4037 2.9476 11 6 3.0084 7.9166 1.6329 12 6 5.3415 7.0765 1.6363 13 1 5.9053 6.5394 0.8879 14 6 5.9373 8.0953 2.3489 15 7 5.2508 8.7491 3.2604 16 14 7.7196 8.5472 2.0195 17 1 7.8707 8.9646 0.6023 18 1 8.1191 9.6666 2.9099 19 1 8.5858 7.3704 2.2841 20 6 2.7202 3.3626 -0.6947 21 8 2.2917 2.1525 -1.0925 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8899 27 1 2.7533 3.4551 3.1779 28 1 1.9698 7.6499 1.8283 29 1 3.3003 8.7403 2.2843 30 1 3.1158 8.2206 0.5918 31 1 5.6701 9.4656 3.7620 32 1 3.0115 4.1833 -1.3335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330843999.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:06 Heat of formation + Delta-G solvation = -13.709839 kcal Electronic energy + Delta-G solvation = -16393.507701 eV Core-core repulsion = 13549.170323 eV Total energy + Delta-G solvation = -2844.337377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.26286 -38.06532 -34.92445 -34.54970 -34.03006 -32.21941 -29.95062 -28.26240 -25.09283 -24.47177 -23.88997 -21.26318 -20.85672 -19.35507 -18.03912 -16.70261 -16.33925 -15.88874 -15.34717 -14.74835 -14.70295 -14.18823 -13.71225 -13.52374 -12.90515 -12.72199 -12.20101 -12.04226 -11.49981 -11.45902 -11.24591 -11.08410 -10.85740 -10.73918 -10.56329 -10.45978 -10.03498 -9.49710 -9.08766 -8.67293 -8.11073 -7.82695 -5.97620 -4.02870 1.39243 2.18938 2.69049 3.35199 3.38293 3.41385 3.67777 3.72326 4.39234 4.47637 4.72564 4.81476 4.85918 5.17425 5.21162 5.34878 5.46001 5.57827 5.65099 5.84283 5.91727 6.15127 6.38388 6.87988 7.13741 7.24157 7.58944 7.68030 7.86125 8.08174 8.22206 8.43321 8.83957 9.07726 9.61170 11.09079 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.046539 B = 0.004994 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.507979 B = 5605.101790 C = 5766.820408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 C 0.191 3.809 4 N -0.476 5.476 5 C -0.002 4.002 6 C 0.364 3.636 7 O -0.501 6.501 8 N -0.488 5.488 9 C 0.198 3.802 10 H 0.029 0.971 11 C -0.123 4.123 12 C -0.501 4.501 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.902 3.098 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.278 1.278 20 C -0.007 4.007 21 O -0.203 6.203 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.390 0.610 28 H 0.006 0.994 29 H 0.090 0.910 30 H 0.033 0.967 31 H 0.262 0.738 32 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.422 -16.049 -6.623 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.062 4.062 3 C -0.018 4.018 4 N -0.206 5.206 5 C -0.120 4.120 6 C 0.135 3.865 7 O -0.295 6.295 8 N -0.223 5.223 9 C 0.091 3.909 10 H 0.047 0.953 11 C -0.182 4.182 12 C -0.539 4.539 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.729 3.271 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.081 4.081 21 O -0.089 6.089 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.242 0.758 28 H 0.025 0.975 29 H 0.108 0.892 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.101 -15.071 -6.510 18.307 hybrid contribution 0.904 0.019 0.122 0.912 sum -7.197 -15.052 -6.388 17.865 Atomic orbital electron populations 1.21791 0.93141 1.02843 1.03120 1.20047 0.96799 0.84204 1.05178 1.26121 1.00181 0.96854 0.78618 1.70543 1.16784 1.02895 1.30394 1.20407 1.06995 0.92280 0.92350 1.20588 0.95796 0.91027 0.79057 1.85063 1.84078 1.39346 1.21015 1.72672 1.12101 0.99951 1.37576 1.19263 0.94831 0.85372 0.91426 0.95332 1.21724 0.94705 1.00858 1.00892 1.20972 0.94919 1.17266 1.20774 0.92274 1.24923 0.98255 0.96038 0.94958 1.69887 1.36390 1.23033 1.23834 0.86507 0.84533 0.77898 0.78143 1.20162 1.21203 1.20326 1.25270 1.00625 0.86165 0.96007 1.84373 1.63916 1.22996 1.37577 0.92106 0.90982 0.91658 0.88873 0.87641 0.75815 0.97528 0.89187 0.94735 0.92828 0.75200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.02 -0.18 6.56 -27.88 -0.18 -0.37 16 3 C 0.19 2.40 7.56 -13.06 -0.10 2.30 16 4 N -0.48 -7.32 10.85 -7.63 -0.08 -7.40 16 5 C 0.00 -0.03 6.96 -83.00 -0.58 -0.61 16 6 C 0.36 7.82 7.98 -14.39 -0.11 7.70 16 7 O -0.50 -10.62 12.00 -17.48 -0.21 -10.83 16 8 N -0.49 -11.95 9.86 -53.92 -0.53 -12.48 16 9 C 0.20 5.55 2.90 -69.08 -0.20 5.35 16 10 H 0.03 0.88 6.72 -51.93 -0.35 0.53 16 11 C -0.12 -3.27 9.30 37.16 0.35 -2.92 16 12 C -0.50 -14.82 8.84 -34.44 -0.30 -15.12 16 13 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 15 N -0.89 -26.49 11.33 55.43 0.63 -25.87 16 16 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.01 -0.11 11.90 29.89 0.36 0.25 16 21 O -0.20 -2.71 10.73 6.21 0.07 -2.65 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.39 6.36 8.41 45.56 0.38 6.75 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 2.53 6.08 -51.93 -0.32 2.22 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 32 H 0.23 3.07 8.06 -52.48 -0.42 2.65 16 LS Contribution 285.21 15.07 4.30 4.30 Total: -1.00 -33.74 285.21 -4.57 -38.30 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -3.21 Total: 1.91 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -0.50 Total: -2.42 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.01 Total: -45.75 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.14 Total: -13.47 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.74 -4.57 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330843999.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.594 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds