Wall clock time and date at job start Sun Mar 29 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47483 * 2 1 4 4 N 1.29989 * 125.40121 * 90.34022 * 3 2 1 5 5 C 1.35973 * 108.50203 * 180.13025 * 4 3 2 6 6 C 1.47713 * 126.42328 * 179.82472 * 5 4 3 7 7 O 1.35264 * 119.99977 * 359.68811 * 6 5 4 8 8 N 1.30163 * 120.00022 * 179.68996 * 6 5 4 9 9 C 1.46499 * 119.99884 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47197 * 359.97438 * 9 8 6 11 11 C 1.53005 * 109.46437 * 239.99556 * 9 8 6 12 12 C 1.50701 * 109.47260 * 120.00041 * 9 8 6 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27562 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.35897 * 107.14991 * 359.56166 * 5 4 3 21 21 O 1.34024 * 125.39676 * 269.97460 * 3 2 1 22 22 H 1.09004 * 109.46939 * 59.99885 * 1 2 3 23 23 H 1.08994 * 109.47603 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46651 * 300.00595 * 1 2 3 25 25 H 1.09000 * 109.47127 * 239.99622 * 2 1 3 26 26 H 1.08995 * 109.46956 * 119.99987 * 2 1 3 27 27 H 0.96694 * 113.99746 * 0.02562 * 7 6 5 28 28 H 1.08996 * 109.47069 * 60.00420 * 11 9 8 29 29 H 1.09004 * 109.46658 * 179.97438 * 11 9 8 30 30 H 1.08995 * 109.47438 * 299.99560 * 11 9 8 31 31 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 32 32 H 1.08006 * 126.51408 * 180.30027 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2894 2.1286 1.0595 5 6 2.7182 3.3570 0.6643 6 6 3.1137 4.4737 1.5466 7 8 3.0611 4.3254 2.8901 8 7 3.5127 5.6004 1.0313 9 6 3.9055 6.7077 1.9064 10 1 3.7977 6.4037 2.9476 11 6 3.0084 7.9166 1.6329 12 6 5.3415 7.0765 1.6363 13 1 5.9053 6.5394 0.8879 14 6 5.9373 8.0953 2.3489 15 7 5.2508 8.7491 3.2604 16 14 7.7196 8.5472 2.0195 17 1 7.8707 8.9646 0.6023 18 1 8.1191 9.6666 2.9099 19 1 8.5858 7.3704 2.2841 20 6 2.7202 3.3626 -0.6947 21 8 2.2917 2.1525 -1.0925 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8899 27 1 2.7533 3.4551 3.1779 28 1 1.9698 7.6499 1.8283 29 1 3.3003 8.7403 2.2843 30 1 3.1158 8.2206 0.5918 31 1 5.6701 9.4656 3.7620 32 1 3.0115 4.1833 -1.3335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330843999.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:06 Heat of formation + Delta-G solvation = -43.093112 kcal Electronic energy + Delta-G solvation = -16394.781855 eV Core-core repulsion = 13549.170323 eV Total energy + Delta-G solvation = -2845.611532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.41172 -39.78690 -36.62845 -35.93400 -34.97090 -34.14492 -31.59183 -29.75102 -27.30586 -25.53718 -25.10923 -22.68893 -22.22781 -21.10807 -19.46935 -18.26487 -17.79233 -17.46477 -17.14401 -16.24221 -15.64716 -15.51057 -15.42245 -14.79094 -14.56116 -13.84621 -13.56654 -13.49739 -13.11759 -12.86242 -12.65546 -12.57942 -12.47652 -12.42472 -12.14392 -12.01544 -11.88137 -11.49973 -10.81376 -10.46810 -10.20877 -9.52325 -8.16576 -6.31683 0.15329 0.94148 1.39047 1.42532 1.50608 1.62670 2.13672 2.37921 2.48660 2.98372 3.12357 3.56930 3.84828 4.22735 4.28822 4.33688 4.48909 4.65199 4.75114 4.77677 5.00420 5.01637 5.08405 5.09314 5.11998 5.37939 5.43735 5.66158 5.90423 6.19060 6.44958 6.67695 6.80186 7.07947 7.39290 8.89340 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.046539 B = 0.004994 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.507979 B = 5605.101790 C = 5766.820408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.025 4.025 3 C 0.208 3.792 4 N -0.497 5.497 5 C -0.037 4.037 6 C 0.381 3.619 7 O -0.518 6.518 8 N -0.521 5.521 9 C 0.202 3.798 10 H -0.011 1.011 11 C -0.111 4.111 12 C -0.528 4.528 13 H 0.050 0.950 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 0.971 3.029 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.274 1.274 20 C 0.014 3.986 21 O -0.196 6.196 22 H 0.057 0.943 23 H 0.099 0.901 24 H 0.049 0.951 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.409 0.591 28 H 0.018 0.982 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.266 0.734 32 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -17.937 -7.931 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 C -0.002 4.002 4 N -0.226 5.226 5 C -0.154 4.154 6 C 0.153 3.847 7 O -0.315 6.315 8 N -0.256 5.256 9 C 0.094 3.906 10 H 0.007 0.993 11 C -0.170 4.170 12 C -0.566 4.566 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.795 3.205 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.199 1.199 20 C -0.061 4.061 21 O -0.082 6.082 22 H 0.076 0.924 23 H 0.118 0.882 24 H 0.068 0.932 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.263 0.737 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -8.057 -16.984 -7.803 20.354 hybrid contribution 0.763 0.388 0.543 1.014 sum -7.294 -16.596 -7.261 19.529 Atomic orbital electron populations 1.21791 0.92191 1.04405 1.02200 1.20447 0.97382 0.81155 1.07262 1.27253 0.97472 0.97896 0.77559 1.70521 1.18159 1.02307 1.31657 1.20060 1.10159 0.92511 0.92699 1.21049 0.92860 0.91198 0.79546 1.85021 1.83863 1.41115 1.21463 1.72613 1.16124 1.00443 1.36431 1.18995 0.94745 0.87075 0.89817 0.99321 1.21541 0.95171 0.99879 1.00373 1.21231 0.96156 1.18009 1.21204 0.93137 1.25803 1.02830 0.95619 0.94434 1.70013 1.38213 1.23208 1.24295 0.85431 0.78793 0.77787 0.78521 1.19143 1.20127 1.19918 1.25509 0.98461 0.86849 0.95234 1.84434 1.63655 1.22345 1.37738 0.92411 0.88209 0.93207 0.86025 0.86273 0.73660 0.96314 0.91277 0.94435 0.92515 0.73849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.02 -0.29 6.56 29.85 0.20 -0.09 16 3 C 0.21 4.70 7.56 88.38 0.67 5.37 16 4 N -0.50 -14.61 10.85 -292.94 -3.18 -17.79 16 5 C -0.04 -1.29 6.96 40.46 0.28 -1.01 16 6 C 0.38 16.64 7.98 87.45 0.70 17.34 16 7 O -0.52 -22.53 12.00 -85.48 -1.03 -23.56 16 8 N -0.52 -26.10 9.86 -438.64 -4.32 -30.43 16 9 C 0.20 11.68 2.90 44.25 0.13 11.81 16 10 H -0.01 -0.71 6.72 -2.39 -0.02 -0.72 16 11 C -0.11 -6.06 9.30 71.98 0.67 -5.39 16 12 C -0.53 -31.99 8.84 25.60 0.23 -31.76 16 13 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 14 C 0.01 0.71 5.31 84.65 0.45 1.16 16 15 N -0.92 -55.51 11.33 21.45 0.24 -55.27 16 16 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 20 C 0.01 0.41 11.90 67.28 0.80 1.21 16 21 O -0.20 -4.74 10.73 -0.70 -0.01 -4.75 16 22 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 23 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.41 13.55 8.41 -74.06 -0.62 12.92 16 28 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 4.01 6.08 -2.38 -0.01 4.00 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.25 6.19 8.06 -2.91 -0.02 6.16 16 Total: -1.00 -74.19 285.21 -0.92 -75.11 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.51 Total: 11.18 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 4.83 Total: -2.14 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -7.26 Total: -103.48 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -1.03 Total: -28.31 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.19 -0.92 -75.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330843999.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.021 kcal (2) G-P(sol) polarization free energy of solvation -74.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds