Wall clock time and date at job start Sun Mar 29 2020 22:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29931 * 125.37785 * 2 1 4 4 C 1.36065 * 108.47728 * 179.97438 * 3 2 1 5 5 C 1.47422 * 126.44852 * 179.97438 * 4 3 2 6 6 O 1.21620 * 120.00009 * 175.10810 * 5 4 3 7 7 N 1.34779 * 120.00023 * 355.10816 * 5 4 3 8 8 C 1.46497 * 119.99783 * 2.52858 * 7 5 4 9 9 C 1.46498 * 119.99668 * 182.52521 * 7 5 4 10 10 C 1.50704 * 109.47174 * 90.00526 * 9 7 5 11 11 H 1.08005 * 119.99525 * 359.97438 * 10 9 7 12 12 C 1.37874 * 120.00209 * 179.97438 * 10 9 7 13 13 N 1.31505 * 120.00054 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99756 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47140 * 90.00257 * 14 12 10 16 16 H 1.48501 * 109.46944 * 209.99805 * 14 12 10 17 17 H 1.48493 * 109.47406 * 330.00257 * 14 12 10 18 18 C 1.36092 * 107.10495 * 359.97438 * 4 3 2 19 19 C 1.50697 * 126.52786 * 180.02562 * 18 4 3 20 20 O 1.34054 * 125.37979 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.47161 * 90.00257 * 1 2 3 22 22 H 1.09005 * 109.47149 * 210.00015 * 1 2 3 23 23 H 1.08996 * 109.47311 * 329.99920 * 1 2 3 24 24 H 1.09002 * 109.47283 * 83.89180 * 8 7 5 25 25 H 1.09001 * 109.46685 * 203.88649 * 8 7 5 26 26 H 1.08993 * 109.47218 * 323.88832 * 8 7 5 27 27 H 1.09002 * 109.46794 * 210.00163 * 9 7 5 28 28 H 1.08997 * 109.47437 * 330.00097 * 9 7 5 29 29 H 0.97004 * 120.00002 * 179.97438 * 13 12 10 30 30 H 1.08995 * 109.47307 * 89.99979 * 19 18 4 31 31 H 1.08996 * 109.47101 * 209.99700 * 19 18 4 32 32 H 1.09001 * 109.47104 * 329.99886 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5611 0.6638 0.0006 5 6 4.7439 1.5439 0.0003 6 8 5.8582 1.0650 0.0907 7 7 4.5903 2.8791 -0.1002 8 6 3.2464 3.4599 -0.1533 9 6 5.7674 3.7495 -0.1563 10 6 6.1814 3.9427 -1.5924 11 1 5.6237 3.4644 -2.3841 12 6 7.2720 4.7298 -1.8956 13 7 7.6335 4.8979 -3.1487 14 14 8.2360 5.5574 -0.5263 15 1 9.3256 4.6559 -0.0731 16 1 8.8206 6.8263 -1.0296 17 1 7.3283 5.8480 0.6125 18 6 3.5660 -0.6971 0.0015 19 6 4.7801 -1.5897 0.0030 20 8 2.2831 -1.0930 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5138 24 1 2.8621 3.5797 0.8596 25 1 3.2903 4.4329 -0.6427 26 1 2.5871 2.7994 -0.7163 27 1 5.5256 4.7163 0.2853 28 1 6.5853 3.2908 0.3991 29 1 8.4006 5.4520 -3.3621 30 1 5.0722 -1.8042 1.0309 31 1 4.5460 -2.5223 -0.5103 32 1 5.6004 -1.0882 -0.5107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331174165.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:27 Heat of formation + Delta-G solvation = -4.002626 kcal Electronic energy + Delta-G solvation = -16970.438067 eV Core-core repulsion = 14126.521626 eV Total energy + Delta-G solvation = -2843.916441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.29841 -38.81487 -35.11291 -34.60319 -32.93262 -32.42580 -30.10049 -28.58040 -26.44358 -25.32915 -23.44050 -22.07093 -20.85413 -18.92610 -17.02866 -16.88700 -16.79460 -15.55402 -15.34981 -14.54189 -14.14948 -13.89840 -13.66318 -13.51255 -12.86683 -12.75013 -12.73183 -12.39742 -12.32102 -12.18106 -11.89851 -11.45423 -11.15529 -10.89365 -10.50322 -10.18488 -9.99415 -9.52506 -9.21929 -8.61436 -8.56453 -7.60640 -6.06110 -4.04951 1.30984 2.25109 2.57571 3.31822 3.37687 3.39603 3.70937 3.90412 4.09434 4.42183 4.75980 5.01722 5.08417 5.19647 5.27098 5.38161 5.42269 5.58017 5.65728 5.98235 6.01746 6.11443 6.19848 6.23845 6.64810 6.78962 6.96339 7.38749 7.62260 7.65809 8.27685 8.48991 8.90792 8.99127 9.53874 11.07303 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037355 B = 0.006479 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.379245 B = 4320.610107 C = 4664.742854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.176 3.824 3 N -0.451 5.451 4 C -0.058 4.058 5 C 0.589 3.411 6 O -0.539 6.539 7 N -0.578 5.578 8 C 0.081 3.919 9 C 0.214 3.786 10 C -0.529 4.529 11 H 0.074 0.926 12 C 0.073 3.927 13 N -0.898 5.898 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.266 1.266 18 C 0.027 3.973 19 C -0.071 4.071 20 O -0.202 6.202 21 H 0.091 0.909 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.033 0.967 28 H 0.039 0.961 29 H 0.264 0.736 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.683 -10.178 7.697 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.032 4.032 3 N -0.182 5.182 4 C -0.178 4.178 5 C 0.375 3.625 6 O -0.417 6.417 7 N -0.307 5.307 8 C -0.062 4.062 9 C 0.094 3.906 10 C -0.567 4.567 11 H 0.093 0.907 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.704 3.296 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.190 1.190 18 C -0.029 4.029 19 C -0.128 4.128 20 O -0.090 6.090 21 H 0.110 0.890 22 H 0.104 0.896 23 H 0.119 0.881 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.189 -9.682 7.628 18.053 hybrid contribution 0.670 -0.056 0.477 0.824 sum -12.520 -9.738 8.105 17.812 Atomic orbital electron populations 1.20235 0.81226 1.04963 1.04642 1.26325 0.96487 0.78741 1.01675 1.71000 1.01101 1.28793 1.17293 1.21834 0.92201 0.92413 1.11316 1.16700 0.85724 0.82044 0.78080 1.90738 1.24386 1.74676 1.51906 1.47646 1.08638 1.05275 1.69137 1.22008 0.83491 0.99773 1.00948 1.19748 0.83556 0.88786 0.98513 1.21332 1.13777 1.30472 0.91135 0.90748 1.24846 0.96633 0.96007 0.95480 1.69898 1.27035 1.39353 1.17344 0.86837 0.80969 0.79246 0.82583 1.19845 1.21049 1.19025 1.23669 0.83546 0.94656 1.01032 1.20540 0.90481 0.97377 1.04374 1.84262 1.16544 1.37979 1.70206 0.88999 0.89560 0.88057 0.93934 0.91491 0.89117 0.94940 0.94338 0.92562 0.89326 0.90598 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.39 10.51 36.00 0.38 -0.02 16 2 C 0.18 2.33 8.30 -13.08 -0.11 2.22 16 3 N -0.45 -7.47 7.85 -7.66 -0.06 -7.53 16 4 C -0.06 -1.09 6.67 -83.02 -0.55 -1.64 16 5 C 0.59 13.39 7.67 -12.52 -0.10 13.29 16 6 O -0.54 -13.40 14.43 5.26 0.08 -13.32 16 7 N -0.58 -13.31 2.86 -184.23 -0.53 -13.84 16 8 C 0.08 1.54 9.58 59.85 0.57 2.11 16 9 C 0.21 5.52 4.22 -5.19 -0.02 5.49 16 10 C -0.53 -15.70 9.94 -34.44 -0.34 -16.04 16 11 H 0.07 2.43 8.06 -52.48 -0.42 2.01 16 12 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 13 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 14 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 15 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.27 6.54 56.52 0.37 -5.91 16 18 C 0.03 0.43 7.44 -35.08 -0.26 0.17 16 19 C -0.07 -0.95 9.83 36.00 0.35 -0.60 16 20 O -0.20 -2.87 10.73 6.51 0.07 -2.80 16 21 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 26 H 0.09 1.66 5.34 -51.93 -0.28 1.38 16 27 H 0.03 0.79 7.13 -51.93 -0.37 0.42 16 28 H 0.04 1.03 6.82 -51.93 -0.35 0.68 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.11 1.79 6.59 -51.93 -0.34 1.45 16 LS Contribution 276.79 15.07 4.17 4.17 Total: -1.00 -35.19 276.79 -4.23 -39.42 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -3.89 Total: -3.04 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -0.18 Total: 7.05 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.19 Total: -48.70 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.15 Total: -16.13 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -35.19 -4.23 -39.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331174165.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.417 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds