Wall clock time and date at job start Sun Mar 29 2020 22:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29931 * 125.37785 * 2 1 4 4 C 1.36065 * 108.47728 * 179.97438 * 3 2 1 5 5 C 1.47422 * 126.44852 * 179.97438 * 4 3 2 6 6 O 1.21620 * 120.00009 * 175.10810 * 5 4 3 7 7 N 1.34779 * 120.00023 * 355.10816 * 5 4 3 8 8 C 1.46497 * 119.99783 * 2.52858 * 7 5 4 9 9 C 1.46498 * 119.99668 * 182.52521 * 7 5 4 10 10 C 1.50704 * 109.47174 * 90.00526 * 9 7 5 11 11 H 1.08005 * 119.99525 * 359.97438 * 10 9 7 12 12 C 1.37874 * 120.00209 * 179.97438 * 10 9 7 13 13 N 1.31505 * 120.00054 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99756 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47140 * 90.00257 * 14 12 10 16 16 H 1.48501 * 109.46944 * 209.99805 * 14 12 10 17 17 H 1.48493 * 109.47406 * 330.00257 * 14 12 10 18 18 C 1.36092 * 107.10495 * 359.97438 * 4 3 2 19 19 C 1.50697 * 126.52786 * 180.02562 * 18 4 3 20 20 O 1.34054 * 125.37979 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.47161 * 90.00257 * 1 2 3 22 22 H 1.09005 * 109.47149 * 210.00015 * 1 2 3 23 23 H 1.08996 * 109.47311 * 329.99920 * 1 2 3 24 24 H 1.09002 * 109.47283 * 83.89180 * 8 7 5 25 25 H 1.09001 * 109.46685 * 203.88649 * 8 7 5 26 26 H 1.08993 * 109.47218 * 323.88832 * 8 7 5 27 27 H 1.09002 * 109.46794 * 210.00163 * 9 7 5 28 28 H 1.08997 * 109.47437 * 330.00097 * 9 7 5 29 29 H 0.97004 * 120.00002 * 179.97438 * 13 12 10 30 30 H 1.08995 * 109.47307 * 89.99979 * 19 18 4 31 31 H 1.08996 * 109.47101 * 209.99700 * 19 18 4 32 32 H 1.09001 * 109.47104 * 329.99886 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5611 0.6638 0.0006 5 6 4.7439 1.5439 0.0003 6 8 5.8582 1.0650 0.0907 7 7 4.5903 2.8791 -0.1002 8 6 3.2464 3.4599 -0.1533 9 6 5.7674 3.7495 -0.1563 10 6 6.1814 3.9427 -1.5924 11 1 5.6237 3.4644 -2.3841 12 6 7.2720 4.7298 -1.8956 13 7 7.6335 4.8979 -3.1487 14 14 8.2360 5.5574 -0.5263 15 1 9.3256 4.6559 -0.0731 16 1 8.8206 6.8263 -1.0296 17 1 7.3283 5.8480 0.6125 18 6 3.5660 -0.6971 0.0015 19 6 4.7801 -1.5897 0.0030 20 8 2.2831 -1.0930 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5138 24 1 2.8621 3.5797 0.8596 25 1 3.2903 4.4329 -0.6427 26 1 2.5871 2.7994 -0.7163 27 1 5.5256 4.7163 0.2853 28 1 6.5853 3.2908 0.3991 29 1 8.4006 5.4520 -3.3621 30 1 5.0722 -1.8042 1.0309 31 1 4.5460 -2.5223 -0.5103 32 1 5.6004 -1.0882 -0.5107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331174165.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:27 Heat of formation + Delta-G solvation = -30.660323 kcal Electronic energy + Delta-G solvation = -16971.594032 eV Core-core repulsion = 14126.521626 eV Total energy + Delta-G solvation = -2845.072406 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.48354 -40.55327 -36.83499 -35.96178 -34.64566 -34.01784 -31.05804 -30.52096 -27.88808 -26.85984 -25.06284 -23.54036 -22.23594 -20.43687 -19.17631 -18.40839 -18.09808 -17.23583 -16.79125 -16.39431 -15.79452 -15.15226 -15.04154 -14.63738 -14.35621 -14.24088 -13.82861 -13.80310 -13.56463 -13.52566 -13.31949 -13.08809 -12.91640 -12.45335 -12.31465 -12.03825 -11.77598 -11.46061 -10.93042 -10.84093 -9.89036 -9.39150 -8.35937 -6.42485 0.04126 1.01268 1.33220 1.37239 1.46103 1.47039 2.11083 2.30399 2.32910 2.92522 2.98268 3.58586 3.67684 4.14978 4.32970 4.46644 4.55554 4.62910 4.67563 4.70507 4.71298 4.81189 4.85716 4.91079 5.06122 5.14919 5.34983 5.40954 5.59462 6.18932 6.41596 6.57830 6.60062 7.12076 7.26488 8.81249 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037355 B = 0.006479 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.379245 B = 4320.610107 C = 4664.742854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.195 3.805 3 N -0.478 5.478 4 C -0.097 4.097 5 C 0.580 3.420 6 O -0.574 6.574 7 N -0.591 5.591 8 C 0.085 3.915 9 C 0.224 3.776 10 C -0.541 4.541 11 H 0.024 0.976 12 C 0.013 3.987 13 N -0.944 5.944 14 Si 0.952 3.048 15 H -0.271 1.271 16 H -0.272 1.272 17 H -0.240 1.240 18 C 0.038 3.962 19 C -0.070 4.070 20 O -0.195 6.195 21 H 0.111 0.889 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.028 0.972 29 H 0.270 0.730 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.365 -10.701 9.499 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.014 4.014 3 N -0.208 5.208 4 C -0.216 4.216 5 C 0.368 3.632 6 O -0.455 6.455 7 N -0.320 5.320 8 C -0.057 4.057 9 C 0.102 3.898 10 C -0.580 4.580 11 H 0.042 0.958 12 C -0.185 4.185 13 N -0.584 5.584 14 Si 0.774 3.226 15 H -0.196 1.196 16 H -0.197 1.197 17 H -0.163 1.163 18 C -0.019 4.019 19 C -0.127 4.127 20 O -0.083 6.083 21 H 0.130 0.870 22 H 0.133 0.867 23 H 0.133 0.867 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.918 -10.195 9.433 20.383 hybrid contribution 1.052 -0.009 -0.175 1.067 sum -13.866 -10.204 9.258 19.547 Atomic orbital electron populations 1.20640 0.76849 1.07032 1.06475 1.27559 0.98247 0.77574 0.98045 1.70889 1.00237 1.30291 1.19408 1.21384 0.92138 0.92962 1.15083 1.17241 0.86697 0.82239 0.77032 1.90692 1.26122 1.75307 1.53386 1.47761 1.09241 1.05575 1.69462 1.22130 0.81710 0.99398 1.02474 1.19462 0.84649 0.90069 0.95620 1.21493 1.13912 1.30420 0.92137 0.95764 1.25864 0.97595 0.96564 0.98450 1.70046 1.27941 1.40402 1.19987 0.85658 0.79348 0.78150 0.79469 1.19636 1.19732 1.16298 1.23997 0.84893 0.94033 0.98933 1.20599 0.88611 0.97906 1.05538 1.84320 1.15697 1.38143 1.70108 0.87049 0.86707 0.86703 0.91569 0.91806 0.88546 0.92935 0.95444 0.92074 0.87561 0.87220 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 10.51 71.23 0.75 0.18 16 2 C 0.19 4.64 8.30 88.39 0.73 5.38 16 3 N -0.48 -15.26 7.85 -293.04 -2.30 -17.56 16 4 C -0.10 -3.69 6.67 40.41 0.27 -3.42 16 5 C 0.58 27.11 7.67 86.66 0.66 27.78 16 6 O -0.57 -29.70 14.43 -4.10 -0.06 -29.76 16 7 N -0.59 -27.75 2.86 -855.04 -2.44 -30.20 16 8 C 0.09 3.19 9.58 127.77 1.22 4.42 16 9 C 0.22 11.64 4.22 85.63 0.36 12.00 16 10 C -0.54 -33.31 9.94 25.60 0.25 -33.06 16 11 H 0.02 1.68 8.06 -2.91 -0.02 1.65 16 12 C 0.01 0.82 5.47 84.66 0.46 1.28 16 13 N -0.94 -60.76 13.96 21.44 0.30 -60.46 16 14 Si 0.95 45.17 27.47 68.60 1.88 47.06 16 15 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 17 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 18 C 0.04 1.20 7.44 25.19 0.19 1.38 16 19 C -0.07 -1.81 9.83 71.23 0.70 -1.11 16 20 O -0.19 -5.04 10.73 0.38 0.00 -5.04 16 21 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 23 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.06 2.38 8.03 -2.39 -0.02 2.36 16 26 H 0.10 3.52 5.34 -2.39 -0.01 3.51 16 27 H 0.05 2.51 7.13 -2.39 -0.02 2.49 16 28 H 0.03 1.49 6.82 -2.39 -0.02 1.47 16 29 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 30 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 2.76 6.59 -2.39 -0.02 2.75 16 Total: -1.00 -80.04 276.79 4.07 -75.97 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.07 Total: 5.16 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 5.61 Total: 14.83 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -4.44 Total: -108.21 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.05 Total: -34.80 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -80.04 4.07 -75.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331174165.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.312 kcal (2) G-P(sol) polarization free energy of solvation -80.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds