Wall clock time and date at job start Sun Mar 29 2020 21:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.35175 * 124.34014 * 269.72283 * 11 10 9 13 13 O 1.21227 * 127.34808 * 2.59008 * 12 11 10 14 14 C 1.50977 * 105.31439 * 182.48053 * 12 11 10 15 15 H 1.09000 * 112.69325 * 108.58001 * 14 12 11 16 16 C 1.53706 * 111.98899 * 236.45882 * 14 12 11 17 17 C 1.54661 * 104.59563 * 136.10101 * 16 14 12 18 18 C 1.54840 * 104.81419 * 358.45460 * 17 16 14 19 19 N 1.46956 * 104.17090 * 335.91165 * 18 17 16 20 20 C 1.33343 * 150.55572 * 224.91313 * 19 18 17 21 21 O 1.21533 * 124.21932 * 337.20741 * 20 19 18 22 22 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 1.08998 * 110.41266 * 17.32311 * 16 14 12 28 28 H 1.09004 * 110.40935 * 254.87665 * 16 14 12 29 29 H 1.08993 * 110.37464 * 239.62327 * 17 16 14 30 30 H 1.09004 * 110.46831 * 117.32794 * 17 16 14 31 31 H 1.08998 * 110.48983 * 217.24171 * 18 17 16 32 32 H 1.08997 * 110.49145 * 94.58208 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 7 5.4865 -2.6367 0.0001 12 6 6.2490 -2.6422 -1.1160 13 8 5.8690 -2.6043 -2.2665 14 6 7.6752 -2.7028 -0.6242 15 1 8.1429 -3.6699 -0.8087 16 6 8.5182 -1.5336 -1.1580 17 6 9.3300 -1.0481 0.0656 18 6 8.8647 -1.9519 1.2335 19 7 7.5266 -2.4040 0.8275 20 6 6.2444 -2.6372 1.1097 21 8 5.8149 -2.8269 2.2307 22 1 -0.4849 0.8402 0.0004 23 1 3.8751 -0.6798 0.8895 24 1 3.8745 -0.6809 -0.8904 25 1 3.6584 -3.1503 0.8903 26 1 3.6578 -3.1507 -0.8897 27 1 7.8725 -0.7365 -1.5264 28 1 9.1878 -1.8768 -1.9466 29 1 9.1040 -0.0038 0.2808 30 1 10.3981 -1.1759 -0.1106 31 1 8.8095 -1.3801 2.1598 32 1 9.5362 -2.8027 1.3485 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331400595.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:08 Heat of formation + Delta-G solvation = -26.054104 kcal Electronic energy + Delta-G solvation = -17245.790397 eV Core-core repulsion = 14400.917732 eV Total energy + Delta-G solvation = -2844.872665 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.36697 -38.27451 -37.81129 -35.49260 -33.51754 -31.97924 -30.49129 -29.20555 -25.40498 -25.14197 -22.13381 -21.56297 -20.75427 -19.69935 -17.56750 -17.19310 -16.62306 -15.95251 -15.41870 -15.38089 -14.49156 -14.30479 -14.11213 -13.75088 -13.28378 -13.23466 -12.81155 -12.59943 -12.01346 -11.79173 -11.71552 -11.11117 -11.05330 -10.86651 -10.47902 -10.26161 -9.91449 -9.85488 -9.34005 -9.23624 -8.93887 -8.58067 -6.08820 -4.08449 1.82541 2.17903 3.11467 3.26212 3.29453 3.36115 3.40405 3.98935 4.13887 4.42161 4.50415 4.69069 4.85237 4.93140 5.15980 5.25058 5.31877 5.36279 5.57062 5.69248 5.76390 5.92807 5.93747 6.12679 6.44222 6.71975 7.12187 7.19884 7.47730 7.59960 7.69621 8.30811 8.44125 8.93152 9.52178 11.04027 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.029876 B = 0.007205 C = 0.007061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.981238 B = 3885.332236 C = 3964.399920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.128 3.872 11 N -0.575 5.575 12 C 0.522 3.478 13 O -0.468 6.468 14 C 0.042 3.958 15 H 0.131 0.869 16 C -0.114 4.114 17 C -0.138 4.138 18 C 0.163 3.837 19 N -0.648 5.648 20 C 0.739 3.261 21 O -0.531 6.531 22 H 0.265 0.735 23 H 0.021 0.979 24 H 0.017 0.983 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.724 -3.530 -0.945 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.559 4.559 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.010 3.990 11 N -0.320 5.320 12 C 0.309 3.691 13 O -0.338 6.338 14 C -0.067 4.067 15 H 0.148 0.852 16 C -0.153 4.153 17 C -0.177 4.177 18 C 0.043 3.957 19 N -0.390 5.390 20 C 0.443 3.557 21 O -0.403 6.403 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.035 0.965 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.974 -3.465 -0.632 21.268 hybrid contribution 0.291 0.911 -0.020 0.957 sum 21.264 -2.554 -0.652 21.427 Atomic orbital electron populations 1.69901 1.06189 1.27043 1.50470 1.24940 0.94735 0.99066 0.94247 0.86785 0.80361 0.83668 0.78566 1.20124 1.21113 1.19224 1.20858 0.88340 0.94962 1.51784 0.90479 1.19893 0.97941 0.91287 0.96991 1.22005 0.71326 1.01728 1.03959 1.47110 1.10512 1.67666 1.06733 1.20710 0.88528 0.74783 0.85096 1.90778 1.79696 1.45622 1.17716 1.23326 0.95354 1.02382 0.85628 0.85174 1.22227 0.98372 0.96574 0.98085 1.22889 1.00433 1.00500 0.93851 1.22006 0.77648 0.97538 0.98509 1.48515 1.08714 1.70344 1.11384 1.14904 0.78898 0.77485 0.84390 1.90963 1.75267 1.52831 1.21230 0.92544 0.96056 0.96494 0.88969 0.89217 0.90022 0.89143 0.90222 0.89308 0.89468 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 8 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 9 C -0.02 -0.58 4.37 -27.88 -0.12 -0.70 16 10 C 0.13 2.73 5.72 -4.04 -0.02 2.71 16 11 N -0.58 -10.71 2.63 -121.03 -0.32 -11.03 16 12 C 0.52 8.57 7.57 -10.67 -0.08 8.49 16 13 O -0.47 -8.87 17.81 5.60 0.10 -8.77 16 14 C 0.04 0.48 3.97 -67.22 -0.27 0.21 16 15 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 16 C -0.11 -0.99 6.63 -25.49 -0.17 -1.16 16 17 C -0.14 -0.91 7.04 -24.89 -0.18 -1.09 16 18 C 0.16 1.36 7.54 -2.82 -0.02 1.34 16 19 N -0.65 -8.62 4.17 -169.73 -0.71 -9.33 16 20 C 0.74 13.38 8.50 -88.55 -0.75 12.63 16 21 O -0.53 -11.44 17.52 5.34 0.09 -11.34 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 24 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 25 H 0.09 1.96 7.82 -51.93 -0.41 1.56 16 26 H 0.09 1.85 8.04 -51.93 -0.42 1.43 16 27 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 274.41 15.07 4.14 4.14 Total: -1.00 -35.34 274.41 -6.75 -42.09 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: -4.12 Total: -5.29 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -2.04 Total: 9.00 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.25 Total: -47.52 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.19 Total: -20.11 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -35.34 -6.75 -42.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331400595.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.038 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds