Wall clock time and date at job start Sun Mar 29 2020 21:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.35175 * 124.34014 * 269.72283 * 11 10 9 13 13 O 1.21227 * 127.34808 * 2.59008 * 12 11 10 14 14 C 1.50977 * 105.31439 * 182.48053 * 12 11 10 15 15 H 1.09000 * 112.69325 * 108.58001 * 14 12 11 16 16 C 1.53706 * 111.98899 * 236.45882 * 14 12 11 17 17 C 1.54661 * 104.59563 * 136.10101 * 16 14 12 18 18 C 1.54840 * 104.81419 * 358.45460 * 17 16 14 19 19 N 1.46956 * 104.17090 * 335.91165 * 18 17 16 20 20 C 1.33343 * 150.55572 * 224.91313 * 19 18 17 21 21 O 1.21533 * 124.21932 * 337.20741 * 20 19 18 22 22 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 1.08998 * 110.41266 * 17.32311 * 16 14 12 28 28 H 1.09004 * 110.40935 * 254.87665 * 16 14 12 29 29 H 1.08993 * 110.37464 * 239.62327 * 17 16 14 30 30 H 1.09004 * 110.46831 * 117.32794 * 17 16 14 31 31 H 1.08998 * 110.48983 * 217.24171 * 18 17 16 32 32 H 1.08997 * 110.49145 * 94.58208 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 7 5.4865 -2.6367 0.0001 12 6 6.2490 -2.6422 -1.1160 13 8 5.8690 -2.6043 -2.2665 14 6 7.6752 -2.7028 -0.6242 15 1 8.1429 -3.6699 -0.8087 16 6 8.5182 -1.5336 -1.1580 17 6 9.3300 -1.0481 0.0656 18 6 8.8647 -1.9519 1.2335 19 7 7.5266 -2.4040 0.8275 20 6 6.2444 -2.6372 1.1097 21 8 5.8149 -2.8269 2.2307 22 1 -0.4849 0.8402 0.0004 23 1 3.8751 -0.6798 0.8895 24 1 3.8745 -0.6809 -0.8904 25 1 3.6584 -3.1503 0.8903 26 1 3.6578 -3.1507 -0.8897 27 1 7.8725 -0.7365 -1.5264 28 1 9.1878 -1.8768 -1.9466 29 1 9.1040 -0.0038 0.2808 30 1 10.3981 -1.1759 -0.1106 31 1 8.8095 -1.3801 2.1598 32 1 9.5362 -2.8027 1.3485 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331400595.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:08 Heat of formation + Delta-G solvation = -51.981249 kcal Electronic energy + Delta-G solvation = -17246.914683 eV Core-core repulsion = 14400.917732 eV Total energy + Delta-G solvation = -2845.996950 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.60206 -39.66033 -38.87727 -37.02278 -35.43116 -33.59226 -31.79584 -30.38694 -27.14373 -26.24299 -23.61897 -22.87082 -21.98329 -20.88892 -19.23953 -18.66326 -17.99775 -17.38662 -16.72709 -16.48166 -16.25527 -15.70672 -15.30101 -15.10295 -14.88782 -14.69555 -14.35971 -13.84194 -13.36852 -13.05034 -12.86614 -12.64607 -12.35938 -12.19883 -11.99056 -11.86505 -11.62159 -11.59741 -11.18759 -10.87337 -10.80965 -10.05965 -8.39076 -6.45053 0.54044 0.95230 1.26724 1.28708 1.40016 1.79152 2.14975 2.26872 2.94820 2.97939 3.27377 3.72897 3.97815 4.02811 4.22370 4.25887 4.32291 4.36908 4.45562 4.55954 4.74011 4.78583 5.03218 5.07483 5.10294 5.16779 5.32141 5.46964 5.62847 6.11922 6.16586 6.33876 6.59985 6.97965 7.19548 8.77008 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.029876 B = 0.007205 C = 0.007061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.981238 B = 3885.332236 C = 3964.399920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.014 3.986 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.536 4.536 8 H 0.045 0.955 9 C -0.011 4.011 10 C 0.139 3.861 11 N -0.587 5.587 12 C 0.514 3.486 13 O -0.500 6.500 14 C 0.056 3.944 15 H 0.174 0.826 16 C -0.112 4.112 17 C -0.125 4.125 18 C 0.151 3.849 19 N -0.643 5.643 20 C 0.731 3.269 21 O -0.579 6.579 22 H 0.270 0.730 23 H 0.012 0.988 24 H 0.016 0.984 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.663 -2.806 -1.437 25.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.184 4.184 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.574 4.574 8 H 0.064 0.936 9 C -0.049 4.049 10 C 0.018 3.982 11 N -0.332 5.332 12 C 0.303 3.697 13 O -0.372 6.372 14 C -0.052 4.052 15 H 0.191 0.809 16 C -0.151 4.151 17 C -0.163 4.163 18 C 0.033 3.967 19 N -0.383 5.383 20 C 0.435 3.565 21 O -0.455 6.455 22 H 0.079 0.921 23 H 0.030 0.970 24 H 0.034 0.966 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.144 0.856 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.103 0.897 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 24.996 -2.738 -1.144 25.172 hybrid contribution -0.934 0.612 0.111 1.122 sum 24.063 -2.125 -1.033 24.178 Atomic orbital electron populations 1.70029 1.07921 1.28433 1.51527 1.25876 0.95661 1.03150 0.93726 0.85721 0.79160 0.78826 0.79341 1.18752 1.19890 1.18462 1.21147 0.90528 0.94046 1.51678 0.93628 1.19686 0.95361 0.93674 0.96174 1.21535 0.73902 0.99127 1.03612 1.47102 1.09504 1.68282 1.08309 1.21668 0.90555 0.73364 0.84103 1.90755 1.80735 1.46946 1.18744 1.23683 0.91958 1.05709 0.83889 0.80890 1.22340 0.98214 0.94620 0.99895 1.22906 1.02354 0.99476 0.91571 1.22597 0.75356 0.99388 0.99327 1.48734 1.08206 1.68671 1.12735 1.15016 0.80451 0.77600 0.83396 1.90922 1.76607 1.55235 1.22732 0.92061 0.96964 0.96613 0.89806 0.89184 0.92527 0.85572 0.90906 0.85064 0.89656 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.89 13.96 21.45 0.30 -59.59 16 2 C 0.01 0.86 5.47 84.65 0.46 1.33 16 3 Si 0.95 46.32 27.47 68.60 1.88 48.20 16 4 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -12.34 6.54 99.48 0.65 -11.69 16 7 C -0.54 -32.28 9.66 25.60 0.25 -32.03 16 8 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 9 C -0.01 -0.55 4.37 29.85 0.13 -0.42 16 10 C 0.14 6.12 5.72 86.38 0.49 6.62 16 11 N -0.59 -21.93 2.63 -773.53 -2.04 -23.97 16 12 C 0.51 16.31 7.57 87.68 0.66 16.98 16 13 O -0.50 -18.71 17.81 -2.86 -0.05 -18.76 16 14 C 0.06 1.07 3.97 44.10 0.18 1.24 16 15 H 0.17 1.99 8.14 -2.39 -0.02 1.97 16 16 C -0.11 -1.46 6.63 31.40 0.21 -1.25 16 17 C -0.12 -1.02 7.04 31.79 0.22 -0.79 16 18 C 0.15 1.87 7.54 86.92 0.66 2.52 16 19 N -0.64 -15.46 4.17 -809.99 -3.38 -18.84 16 20 C 0.73 26.20 8.50 179.62 1.53 27.72 16 21 O -0.58 -25.39 17.52 -3.82 -0.07 -25.46 16 22 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 23 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 24 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 25 H 0.08 3.78 7.82 -2.39 -0.02 3.76 16 26 H 0.09 3.89 8.04 -2.39 -0.02 3.87 16 27 H 0.06 1.06 7.85 -2.39 -0.02 1.04 16 28 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.13 0.09 8.14 -2.38 -0.02 0.07 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -80.85 274.41 2.50 -78.35 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: 1.06 Total: -1.83 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 4.79 Total: 21.90 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -5.11 Total: -102.40 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.12 Total: -44.22 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.88 Total: 48.20 kcal Total: -80.85 2.50 -78.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331400595.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.368 kcal (2) G-P(sol) polarization free energy of solvation -80.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds