Wall clock time and date at job start Sun Mar 29 2020 21:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46839 * 143.87418 * 3 2 1 5 5 C 1.53005 * 109.46927 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47160 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99855 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00197 * 180.02562 * 6 5 4 9 9 C 1.47581 * 134.49354 * 180.02562 * 8 6 5 10 10 C 1.53945 * 86.11895 * 155.35947 * 9 8 6 11 11 O 1.42904 * 113.73986 * 269.15696 * 10 9 8 12 12 C 1.50694 * 113.74220 * 137.95139 * 10 9 8 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47582 * 134.48982 * 359.97438 * 8 6 5 21 21 H 1.09008 * 109.46883 * 23.88091 * 3 2 1 22 22 H 1.09001 * 109.47240 * 263.87720 * 3 2 1 23 23 H 1.09008 * 109.46834 * 60.00643 * 4 3 2 24 24 H 1.09001 * 109.47451 * 300.00173 * 4 3 2 25 25 H 1.08994 * 109.46740 * 60.00432 * 5 4 3 26 26 H 1.09001 * 109.47279 * 300.00380 * 5 4 3 27 27 H 1.09001 * 113.77016 * 41.05438 * 9 8 6 28 28 H 1.09005 * 113.86980 * 269.67513 * 9 8 6 29 29 H 0.96699 * 113.99284 * 178.07513 * 11 10 9 30 30 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 31 31 H 1.09002 * 113.76615 * 90.34214 * 20 8 6 32 32 H 1.08991 * 113.77327 * 318.94082 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1661 -0.8505 5 6 4.6475 1.1671 -0.8500 6 6 5.1493 2.3153 -1.6871 7 8 4.3608 3.0598 -2.2302 8 7 6.4742 2.5150 -1.8322 9 6 7.2982 3.5046 -2.5530 10 6 8.3981 3.1819 -1.5254 11 8 8.3683 4.0201 -0.3684 12 6 9.7742 3.0604 -2.1275 13 1 9.9131 3.1982 -3.1896 14 6 10.8561 2.7732 -1.3223 15 7 10.6871 2.6058 -0.0289 16 14 12.5617 2.6218 -2.0688 17 1 13.5443 2.3110 -0.9995 18 1 12.5658 1.5319 -3.0774 19 1 12.9313 3.9027 -2.7229 20 6 7.6838 1.8322 -1.3333 21 1 2.9718 -0.9389 -0.4161 22 1 2.9714 0.1104 1.0218 23 1 2.7537 2.1057 -0.4344 24 1 2.7541 1.0563 -1.8723 25 1 5.0115 0.2277 -1.2657 26 1 5.0104 1.2771 0.1720 27 1 6.9194 4.5244 -2.4855 28 1 7.5494 3.2109 -3.5723 29 1 9.0391 3.8016 0.2929 30 1 11.4482 2.4034 0.5375 31 1 8.0476 1.0448 -1.9935 32 1 7.6127 1.5172 -0.2924 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332079118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:21 Heat of formation + Delta-G solvation = -58.938058 kcal Electronic energy + Delta-G solvation = -16378.759536 eV Core-core repulsion = 13532.460916 eV Total energy + Delta-G solvation = -2846.298620 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.10838 -39.15987 -37.86133 -35.74767 -35.14589 -34.07779 -30.97854 -29.13438 -26.91969 -26.90072 -23.38978 -21.53537 -19.86407 -19.24804 -18.47039 -17.61841 -17.11984 -16.97158 -16.33592 -15.97555 -15.81822 -15.01214 -14.83391 -14.42138 -14.18814 -13.93890 -13.65056 -13.56258 -13.33668 -12.81958 -12.73880 -12.57896 -12.51189 -12.29305 -12.19250 -12.13646 -11.57260 -11.33206 -10.85394 -10.57141 -10.16368 -9.47733 -8.22268 -6.38438 1.50924 1.54036 1.60190 1.76084 1.77975 1.87099 2.11293 2.44730 3.00720 3.14009 3.57466 3.87547 4.14098 4.20821 4.27060 4.40373 4.55544 4.64913 4.71795 4.75366 4.88865 4.92296 5.02097 5.07250 5.22096 5.32938 5.39175 5.77854 5.99348 6.65767 6.66072 6.99202 7.26559 7.35623 7.53849 8.83084 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.050491 B = 0.004587 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.419970 B = 6102.584789 C = 6315.203059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.237 3.763 3 C -0.016 4.016 4 C -0.095 4.095 5 C -0.121 4.121 6 C 0.514 3.486 7 O -0.607 6.607 8 N -0.636 5.636 9 C 0.105 3.895 10 C 0.215 3.785 11 O -0.588 6.588 12 C -0.558 4.558 13 H 0.068 0.932 14 C 0.036 3.964 15 N -0.914 5.914 16 Si 0.965 3.035 17 H -0.283 1.283 18 H -0.267 1.267 19 H -0.279 1.279 20 C 0.096 3.904 21 H 0.148 0.852 22 H 0.143 0.857 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.117 0.883 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.388 0.612 30 H 0.276 0.724 31 H 0.095 0.905 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 -8.303 1.388 9.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.079 4.079 3 C -0.055 4.055 4 C -0.135 4.135 5 C -0.161 4.161 6 C 0.306 3.694 7 O -0.491 6.491 8 N -0.369 5.369 9 C -0.018 4.018 10 C 0.174 3.826 11 O -0.401 6.401 12 C -0.596 4.596 13 H 0.087 0.913 14 C -0.164 4.164 15 N -0.554 5.554 16 Si 0.790 3.210 17 H -0.208 1.208 18 H -0.192 1.192 19 H -0.205 1.205 20 C -0.027 4.027 21 H 0.165 0.835 22 H 0.161 0.839 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.145 0.855 26 H 0.135 0.865 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.243 0.757 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.273 -7.734 1.007 10.009 hybrid contribution 1.675 0.157 -0.140 1.689 sum -4.598 -7.577 0.867 8.905 Atomic orbital electron populations 1.81244 1.15428 1.11060 1.11321 1.29942 0.95998 0.91024 0.90971 1.19582 0.78644 1.02018 1.05299 1.21162 0.93448 0.98157 1.00690 1.21596 0.96217 0.96733 1.01515 1.21365 0.79812 0.86825 0.81357 1.90631 1.55338 1.50513 1.52571 1.50244 1.04343 1.32063 1.50241 1.23420 0.88346 0.92627 0.97376 1.20143 0.91783 0.86902 0.83777 1.86049 1.61140 1.60045 1.32845 1.21723 0.92690 1.49882 0.95340 0.91342 1.25670 1.02648 0.92917 0.95212 1.69358 1.33126 1.48264 1.04666 0.85505 0.78753 0.78583 0.78148 1.20793 1.19177 1.20497 1.24066 0.80156 0.98922 0.99520 0.83473 0.83917 0.92452 0.91851 0.85491 0.86520 0.93006 0.88393 0.75663 0.91413 0.88716 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.95 18.54 20.01 0.37 -13.58 16 2 C 0.24 4.55 15.43 89.44 1.38 5.93 16 3 C -0.02 -0.16 5.70 28.79 0.16 0.01 16 4 C -0.10 -1.74 4.46 30.60 0.14 -1.60 16 5 C -0.12 -2.46 5.45 29.85 0.16 -2.30 16 6 C 0.51 17.89 8.06 87.66 0.71 18.60 16 7 O -0.61 -25.97 16.71 -3.04 -0.05 -26.02 16 8 N -0.64 -24.02 3.61 -840.31 -3.03 -27.05 16 9 C 0.11 4.40 8.23 86.48 0.71 5.11 16 10 C 0.22 9.69 1.44 -10.89 -0.02 9.68 16 11 O -0.59 -29.12 13.48 -148.98 -2.01 -31.13 16 12 C -0.56 -26.56 8.62 25.60 0.22 -26.34 16 13 H 0.07 3.19 7.81 -2.91 -0.02 3.17 16 14 C 0.04 1.70 5.40 84.66 0.46 2.16 16 15 N -0.91 -43.38 11.09 21.45 0.24 -43.15 16 16 Si 0.96 37.62 29.54 68.60 2.03 39.65 16 17 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 18 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 20 C 0.10 3.56 8.00 86.47 0.69 4.25 16 21 H 0.15 0.49 8.14 -2.38 -0.02 0.48 16 22 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.06 1.30 8.10 -2.38 -0.02 1.28 16 24 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 25 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.10 3.75 8.09 -2.38 -0.02 3.73 16 29 H 0.39 19.36 6.46 -74.06 -0.48 18.88 16 30 H 0.28 12.48 8.31 -92.71 -0.77 11.71 16 31 H 0.09 3.28 8.09 -2.39 -0.02 3.26 16 32 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -65.24 288.89 2.82 -62.42 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.66 Total: 23.35 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 4.62 Total: 15.50 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.42 Total: -83.77 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -2.06 Total: -57.15 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -65.24 2.82 -62.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332079118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.483 kcal (2) G-P(sol) polarization free energy of solvation -65.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds