Wall clock time and date at job start Sun Mar 29 2020 22:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.54173 * 112.60309 * 2 1 4 4 C 1.55979 * 101.81009 * 82.88619 * 3 2 1 5 5 C 1.54493 * 105.16170 * 21.35555 * 4 3 2 6 6 N 1.46732 * 106.40294 * 4.01936 * 5 4 3 7 7 C 1.33584 * 148.91652 * 144.10612 * 6 5 4 8 8 O 1.21537 * 124.04398 * 21.60730 * 7 6 5 9 9 N 1.34223 * 111.90312 * 201.57454 * 7 6 5 10 10 C 1.46498 * 124.25540 * 173.71661 * 9 7 6 11 11 C 1.50706 * 109.46728 * 269.69577 * 10 9 7 12 12 H 1.08002 * 120.00050 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99741 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99427 * 179.97438 * 13 11 10 15 15 Si 1.86788 * 120.00179 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47365 * 89.99877 * 15 13 11 17 17 H 1.48504 * 109.47240 * 209.99972 * 15 13 11 18 18 H 1.48506 * 109.47359 * 329.99808 * 15 13 11 19 19 C 1.35165 * 111.48430 * 353.44029 * 9 7 6 20 20 O 1.21231 * 127.33969 * 175.16660 * 19 9 7 21 21 H 1.09002 * 109.46862 * 186.96193 * 1 2 3 22 22 H 1.08997 * 109.47551 * 306.97213 * 1 2 3 23 23 H 1.09001 * 109.47036 * 66.97288 * 1 2 3 24 24 H 1.09003 * 110.85928 * 200.65015 * 3 2 1 25 25 H 1.09002 * 110.85794 * 324.29370 * 3 2 1 26 26 H 1.08991 * 109.80262 * 262.62690 * 4 3 2 27 27 H 1.09000 * 110.73649 * 140.55743 * 4 3 2 28 28 H 1.08996 * 110.06234 * 244.79064 * 5 4 3 29 29 H 1.08998 * 110.11822 * 123.28599 * 5 4 3 30 30 H 1.09006 * 109.47296 * 29.69079 * 10 9 7 31 31 H 1.08996 * 109.47348 * 149.69843 * 10 9 7 32 32 H 0.97004 * 119.99561 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1225 1.4233 0.0000 4 6 2.0707 1.7907 1.5150 5 6 1.9997 0.4373 2.2568 6 7 2.1101 -0.6045 1.2295 7 6 2.5593 -1.8086 0.8648 8 8 2.8597 -2.6884 1.6476 9 7 2.6383 -1.9305 -0.4695 10 6 3.2189 -3.0852 -1.1591 11 6 4.6901 -2.8482 -1.3843 12 1 5.1467 -1.9291 -1.0479 13 6 5.4531 -3.8046 -2.0200 14 7 6.7367 -3.5975 -2.2169 15 14 4.6632 -5.3939 -2.6026 16 1 4.1695 -5.2209 -3.9924 17 1 5.6669 -6.4878 -2.5664 18 1 3.5252 -5.7366 -1.7121 19 6 2.1092 -0.8565 -1.0969 20 8 2.1027 -0.6300 -2.2879 21 1 -0.3633 -1.0201 0.1246 22 1 -0.3634 0.6180 0.8210 23 1 -0.3633 0.4020 -0.9458 24 1 3.1516 1.4153 -0.3592 25 1 1.5081 2.0995 -0.5945 26 1 1.1793 2.3832 1.7210 27 1 2.9657 2.3383 1.8102 28 1 1.0478 0.3472 2.7801 29 1 2.8246 0.3539 2.9644 30 1 3.0841 -3.9784 -0.5490 31 1 2.7219 -3.2227 -2.1194 32 1 7.2735 -4.2702 -2.6645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336490040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:28 Heat of formation + Delta-G solvation = -23.272636 kcal Electronic energy + Delta-G solvation = -17658.973929 eV Core-core repulsion = 14814.221877 eV Total energy + Delta-G solvation = -2844.752051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.17343 -37.90825 -37.71084 -35.01873 -32.96696 -31.42252 -31.12598 -28.47224 -26.77839 -24.21329 -23.15789 -21.21211 -20.45139 -19.65309 -17.22651 -16.52880 -16.38146 -15.66796 -15.34387 -15.06505 -14.51470 -14.07254 -13.93250 -13.37672 -13.26269 -12.55378 -12.50199 -12.39925 -12.24671 -11.96474 -11.60377 -11.53991 -11.22997 -10.82064 -10.68353 -10.39207 -10.07642 -9.68101 -9.51640 -8.87408 -8.66462 -8.53905 -6.15741 -4.17278 2.17431 2.54275 3.26707 3.32649 3.34553 3.52575 3.59349 4.19347 4.33037 4.34090 4.72700 4.84198 4.90871 5.05583 5.15954 5.32621 5.45941 5.51730 5.61476 5.64649 5.73775 5.87618 5.96397 6.09063 6.39480 6.52344 6.67529 7.20665 7.42337 7.84250 8.01115 8.33733 8.71060 8.84162 9.40806 10.97207 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.035567 B = 0.007991 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.047388 B = 3502.886643 C = 3626.441548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.065 3.935 3 C -0.107 4.107 4 C -0.135 4.135 5 C 0.162 3.838 6 N -0.642 5.642 7 C 0.739 3.261 8 O -0.536 6.536 9 N -0.556 5.556 10 C 0.220 3.780 11 C -0.538 4.538 12 H 0.076 0.924 13 C 0.078 3.922 14 N -0.890 5.890 15 Si 0.875 3.125 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.263 1.263 19 C 0.529 3.471 20 O -0.470 6.470 21 H 0.064 0.936 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.207 10.731 6.604 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.026 4.026 3 C -0.146 4.146 4 C -0.174 4.174 5 C 0.041 3.959 6 N -0.384 5.384 7 C 0.444 3.556 8 O -0.409 6.409 9 N -0.299 5.299 10 C 0.102 3.898 11 C -0.576 4.576 12 H 0.094 0.906 13 C -0.126 4.126 14 N -0.528 5.528 15 Si 0.701 3.299 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.187 1.187 19 C 0.315 3.685 20 O -0.340 6.340 21 H 0.083 0.917 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.735 10.044 6.520 17.481 hybrid contribution -0.062 -0.878 -0.352 0.948 sum -12.796 9.166 6.168 16.906 Atomic orbital electron populations 1.21719 0.90144 1.03340 1.03609 1.22658 0.96850 0.95801 0.87261 1.22605 1.02451 0.92948 0.96603 1.23004 1.03453 0.96350 0.94564 1.21712 1.02228 0.83026 0.88928 1.48426 1.62029 1.15528 1.12448 1.14920 0.77221 0.81032 0.82457 1.90914 1.53685 1.42153 1.54114 1.46772 1.55232 1.21691 1.06227 1.19954 0.95291 0.82245 0.92348 1.21126 0.90696 1.06080 1.39687 0.90571 1.24785 0.94711 0.98172 0.94895 1.69879 1.05731 1.35292 1.41870 0.86857 0.79826 0.83354 0.79859 1.19666 1.20573 1.18704 1.20469 0.77215 0.81918 0.88892 1.90719 1.55719 1.73138 1.14434 0.91692 0.90625 0.90194 0.89921 0.88974 0.89893 0.89874 0.90945 0.90140 0.92946 0.93747 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.03 37.16 0.34 -1.07 16 2 C 0.07 0.95 0.90 -131.08 -0.12 0.84 16 3 C -0.11 -1.24 6.22 -24.52 -0.15 -1.39 16 4 C -0.14 -1.14 6.68 -24.35 -0.16 -1.30 16 5 C 0.16 1.76 7.18 -3.13 -0.02 1.74 16 6 N -0.64 -10.48 3.89 -162.87 -0.63 -11.12 16 7 C 0.74 16.05 8.54 -88.48 -0.76 15.29 16 8 O -0.54 -13.38 17.49 5.33 0.09 -13.28 16 9 N -0.56 -12.70 2.61 -122.40 -0.32 -13.01 16 10 C 0.22 5.67 4.57 -5.19 -0.02 5.64 16 11 C -0.54 -16.00 9.94 -34.44 -0.34 -16.34 16 12 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 13 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 14 N -0.89 -27.69 13.96 55.43 0.77 -26.92 16 15 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 19 C 0.53 10.66 7.10 -10.79 -0.08 10.58 16 20 O -0.47 -10.54 17.82 5.60 0.10 -10.44 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 0.60 7.64 -51.93 -0.40 0.21 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 25 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 1.36 6.88 -51.93 -0.36 1.00 16 31 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 32 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 272.94 15.07 4.11 4.11 Total: -1.00 -35.69 272.94 -6.06 -41.75 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: -4.10 Total: -4.27 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: -1.42 Total: 16.20 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.18 Total: -51.05 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.19 Total: -23.72 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -35.69 -6.06 -41.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336490040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.481 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds