Wall clock time and date at job start Sun Mar 29 2020 22:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.54173 * 112.60309 * 2 1 4 4 C 1.55979 * 101.81009 * 82.88619 * 3 2 1 5 5 C 1.54493 * 105.16170 * 21.35555 * 4 3 2 6 6 N 1.46732 * 106.40294 * 4.01936 * 5 4 3 7 7 C 1.33584 * 148.91652 * 144.10612 * 6 5 4 8 8 O 1.21537 * 124.04398 * 21.60730 * 7 6 5 9 9 N 1.34223 * 111.90312 * 201.57454 * 7 6 5 10 10 C 1.46498 * 124.25540 * 173.71661 * 9 7 6 11 11 C 1.50706 * 109.46728 * 269.69577 * 10 9 7 12 12 H 1.08002 * 120.00050 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99741 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99427 * 179.97438 * 13 11 10 15 15 Si 1.86788 * 120.00179 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47365 * 89.99877 * 15 13 11 17 17 H 1.48504 * 109.47240 * 209.99972 * 15 13 11 18 18 H 1.48506 * 109.47359 * 329.99808 * 15 13 11 19 19 C 1.35165 * 111.48430 * 353.44029 * 9 7 6 20 20 O 1.21231 * 127.33969 * 175.16660 * 19 9 7 21 21 H 1.09002 * 109.46862 * 186.96193 * 1 2 3 22 22 H 1.08997 * 109.47551 * 306.97213 * 1 2 3 23 23 H 1.09001 * 109.47036 * 66.97288 * 1 2 3 24 24 H 1.09003 * 110.85928 * 200.65015 * 3 2 1 25 25 H 1.09002 * 110.85794 * 324.29370 * 3 2 1 26 26 H 1.08991 * 109.80262 * 262.62690 * 4 3 2 27 27 H 1.09000 * 110.73649 * 140.55743 * 4 3 2 28 28 H 1.08996 * 110.06234 * 244.79064 * 5 4 3 29 29 H 1.08998 * 110.11822 * 123.28599 * 5 4 3 30 30 H 1.09006 * 109.47296 * 29.69079 * 10 9 7 31 31 H 1.08996 * 109.47348 * 149.69843 * 10 9 7 32 32 H 0.97004 * 119.99561 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1225 1.4233 0.0000 4 6 2.0707 1.7907 1.5150 5 6 1.9997 0.4373 2.2568 6 7 2.1101 -0.6045 1.2295 7 6 2.5593 -1.8086 0.8648 8 8 2.8597 -2.6884 1.6476 9 7 2.6383 -1.9305 -0.4695 10 6 3.2189 -3.0852 -1.1591 11 6 4.6901 -2.8482 -1.3843 12 1 5.1467 -1.9291 -1.0479 13 6 5.4531 -3.8046 -2.0200 14 7 6.7367 -3.5975 -2.2169 15 14 4.6632 -5.3939 -2.6026 16 1 4.1695 -5.2209 -3.9924 17 1 5.6669 -6.4878 -2.5664 18 1 3.5252 -5.7366 -1.7121 19 6 2.1092 -0.8565 -1.0969 20 8 2.1027 -0.6300 -2.2879 21 1 -0.3633 -1.0201 0.1246 22 1 -0.3634 0.6180 0.8210 23 1 -0.3633 0.4020 -0.9458 24 1 3.1516 1.4153 -0.3592 25 1 1.5081 2.0995 -0.5945 26 1 1.1793 2.3832 1.7210 27 1 2.9657 2.3383 1.8102 28 1 1.0478 0.3472 2.7801 29 1 2.8246 0.3539 2.9644 30 1 3.0841 -3.9784 -0.5490 31 1 2.7219 -3.2227 -2.1194 32 1 7.2735 -4.2702 -2.6645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336490040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:28 Heat of formation + Delta-G solvation = -50.446328 kcal Electronic energy + Delta-G solvation = -17660.152268 eV Core-core repulsion = 14814.221877 eV Total energy + Delta-G solvation = -2845.930391 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.64741 -39.59071 -39.03717 -36.79185 -35.05522 -32.92385 -32.21124 -30.17313 -27.93479 -25.64972 -24.98567 -22.53213 -21.79781 -21.05734 -19.40440 -18.13431 -17.81105 -17.23232 -16.97657 -16.37341 -16.09146 -15.64770 -15.33965 -14.79546 -14.67008 -14.43579 -14.02653 -13.47730 -13.45285 -13.28556 -13.20627 -12.62576 -12.51901 -12.38079 -12.32756 -11.90189 -11.76742 -11.54699 -11.07127 -10.93383 -10.67606 -9.97090 -8.46053 -6.55847 0.59345 1.06831 1.28860 1.32778 1.42616 1.93640 2.19672 2.23021 2.86543 2.99066 3.21889 3.69830 3.81558 4.14633 4.21660 4.30011 4.46144 4.56277 4.61527 4.66104 4.72545 4.83072 4.85111 4.98198 5.06983 5.19736 5.21409 5.30908 5.71526 5.99072 6.24091 6.42422 6.43979 7.01650 7.12890 8.70882 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.035567 B = 0.007991 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.047388 B = 3502.886643 C = 3626.441548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.075 3.925 3 C -0.109 4.109 4 C -0.117 4.117 5 C 0.145 3.855 6 N -0.636 5.636 7 C 0.729 3.271 8 O -0.584 6.584 9 N -0.576 5.576 10 C 0.228 3.772 11 C -0.554 4.554 12 H 0.025 0.975 13 C 0.018 3.982 14 N -0.936 5.936 15 Si 0.950 3.050 16 H -0.255 1.255 17 H -0.269 1.269 18 H -0.247 1.247 19 C 0.515 3.485 20 O -0.503 6.503 21 H 0.052 0.948 22 H 0.120 0.880 23 H 0.094 0.906 24 H 0.048 0.952 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.047 12.042 7.355 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.015 4.015 3 C -0.147 4.147 4 C -0.155 4.155 5 C 0.027 3.973 6 N -0.377 5.377 7 C 0.433 3.567 8 O -0.461 6.461 9 N -0.319 5.319 10 C 0.108 3.892 11 C -0.592 4.592 12 H 0.044 0.956 13 C -0.181 4.181 14 N -0.574 5.574 15 Si 0.771 3.229 16 H -0.180 1.180 17 H -0.193 1.193 18 H -0.170 1.170 19 C 0.304 3.696 20 O -0.375 6.375 21 H 0.071 0.929 22 H 0.138 0.862 23 H 0.113 0.887 24 H 0.067 0.933 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.111 0.889 28 H 0.128 0.872 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.610 11.450 7.302 20.691 hybrid contribution 0.887 -1.154 -0.561 1.560 sum -14.724 10.295 6.741 19.189 Atomic orbital electron populations 1.21825 0.86241 1.03797 1.06280 1.23044 0.99226 0.95879 0.83399 1.22729 1.00924 0.91332 0.99738 1.23053 1.06414 0.95049 0.91005 1.22373 1.04155 0.82446 0.88320 1.48628 1.60221 1.14145 1.14689 1.15082 0.77435 0.82496 0.81700 1.90858 1.56178 1.44151 1.54888 1.46867 1.55705 1.21963 1.07357 1.19586 0.92909 0.83763 0.92948 1.21278 0.93123 1.04609 1.40228 0.95642 1.25859 0.95206 1.02484 0.94592 1.70022 1.07527 1.37101 1.42747 0.85684 0.79398 0.77788 0.80054 1.17966 1.19337 1.17023 1.21620 0.76356 0.81832 0.89832 1.90678 1.56913 1.73775 1.16161 0.92913 0.86179 0.88745 0.93278 0.85626 0.85103 0.88892 0.87226 0.90489 0.93273 0.92982 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.03 71.98 0.65 -1.54 16 2 C 0.07 2.03 0.90 2.83 0.00 2.03 16 3 C -0.11 -2.19 6.22 32.02 0.20 -1.99 16 4 C -0.12 -1.39 6.68 32.13 0.21 -1.18 16 5 C 0.14 2.65 7.18 86.84 0.62 3.27 16 6 N -0.64 -20.03 3.89 -788.15 -3.06 -23.09 16 7 C 0.73 32.47 8.54 179.60 1.53 34.01 16 8 O -0.58 -30.27 17.49 -3.83 -0.07 -30.34 16 9 N -0.58 -27.26 2.61 -777.93 -2.03 -29.29 16 10 C 0.23 12.18 4.57 85.64 0.39 12.57 16 11 C -0.55 -34.78 9.94 25.60 0.25 -34.53 16 12 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 13 C 0.02 1.11 5.47 84.66 0.46 1.57 16 14 N -0.94 -60.33 13.96 21.45 0.30 -60.03 16 15 Si 0.95 45.20 27.47 68.60 1.88 47.09 16 16 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 19 C 0.51 21.07 7.10 87.61 0.62 21.69 16 20 O -0.50 -23.10 17.82 -2.88 -0.05 -23.15 16 21 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.12 1.11 7.64 -2.39 -0.02 1.10 16 23 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.32 8.01 -2.39 -0.02 1.30 16 25 H 0.13 1.73 8.08 -2.39 -0.02 1.71 16 26 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 2.62 6.88 -2.38 -0.02 2.61 16 31 H 0.05 2.66 7.49 -2.39 -0.02 2.64 16 32 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -85.28 272.94 2.99 -82.29 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: 1.06 Total: 0.60 kcal Atomic # 6 Polarization: 30.97 SS G_CDS: 4.95 Total: 35.92 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -4.79 Total: -112.41 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.12 Total: -53.49 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.09 kcal Total: -85.28 2.99 -82.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336490040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.846 kcal (2) G-P(sol) polarization free energy of solvation -85.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds