Wall clock time and date at job start Sun Mar 29 2020 21:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 119.99761 * 2 1 4 4 H 1.48498 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47469 * 299.99935 * 3 2 1 6 6 H 1.48500 * 109.47207 * 60.00160 * 3 2 1 7 7 C 1.38949 * 120.00526 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00411 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99639 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99812 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99940 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99777 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47038 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00046 * 179.97438 * 13 12 10 15 15 O 1.21616 * 119.99956 * 0.02562 * 14 13 12 16 16 C 1.47100 * 120.00082 * 180.02562 * 14 13 12 17 17 C 1.32610 * 124.62105 * 180.02562 * 16 14 13 18 18 C 1.51119 * 110.75876 * 179.73707 * 17 16 14 19 19 C 1.54581 * 104.83726 * 16.84375 * 18 17 16 20 20 C 1.51116 * 124.61935 * 0.16857 * 16 14 13 21 21 H 0.96997 * 120.00710 * 0.02562 * 1 2 3 22 22 H 0.97002 * 119.99968 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.47417 * 60.00057 * 12 10 9 24 24 H 1.09000 * 109.47050 * 300.00239 * 12 10 9 25 25 H 0.96998 * 120.00201 * 0.02562 * 13 12 10 26 26 H 1.08002 * 124.62322 * 0.02562 * 17 16 14 27 27 H 1.09003 * 110.36233 * 135.68401 * 18 17 16 28 28 H 1.08999 * 110.36538 * 258.00007 * 18 17 16 29 29 H 1.09003 * 110.98246 * 93.07271 * 19 18 17 30 30 H 1.08999 * 110.97876 * 216.86735 * 19 18 17 31 31 H 1.08999 * 110.50363 * 44.70466 * 20 16 14 32 32 H 1.08999 * 110.26216 * 282.46911 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0000 13 7 2.1960 -5.9764 -0.0005 14 6 1.7468 -7.2471 -0.0006 15 8 0.5511 -7.4694 -0.0007 16 6 2.7027 -8.3652 -0.0005 17 6 2.3629 -9.6470 -0.0010 18 6 3.5915 -10.5269 -0.0073 19 6 4.7478 -9.5952 0.4224 20 6 4.2058 -8.2096 0.0033 21 1 -0.4851 0.8400 -0.0004 22 1 0.3534 -2.3907 -0.0002 23 1 0.6176 -4.9206 -0.8903 24 1 0.6169 -4.9209 0.8897 25 1 3.1496 -5.7992 -0.0001 26 1 1.3466 -10.0124 -0.0020 27 1 3.4770 -11.3432 0.7059 28 1 3.7722 -10.9190 -1.0081 29 1 4.9072 -9.6424 1.4997 30 1 5.6638 -9.8357 -0.1171 31 1 4.5092 -7.4499 0.7236 32 1 4.5609 -7.9492 -0.9938 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343505467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:24 Heat of formation + Delta-G solvation = -69.360865 kcal Electronic energy + Delta-G solvation = -16124.383380 eV Core-core repulsion = 13277.632794 eV Total energy + Delta-G solvation = -2846.750587 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88548 -38.38611 -37.50137 -34.45951 -33.66987 -31.39408 -29.77176 -28.69599 -27.24299 -24.55974 -21.96942 -20.79926 -19.65624 -18.70754 -17.99892 -17.19576 -15.92991 -15.69469 -15.29839 -15.04607 -14.73080 -14.17769 -13.74654 -13.60645 -12.92036 -12.77859 -12.25102 -12.10220 -11.93504 -11.76297 -11.63547 -11.37950 -11.29145 -11.14581 -10.41192 -10.33030 -9.77501 -9.65321 -9.06544 -8.73037 -8.63937 -8.10699 -6.51967 -3.94031 1.40283 3.09953 3.22020 3.28169 3.44294 3.44582 3.74017 4.11281 4.39512 4.47781 4.82838 4.87537 5.01008 5.16634 5.16677 5.48212 5.54171 5.64646 5.69696 5.79405 5.91681 5.96194 6.01822 6.06806 6.27524 6.47429 6.68850 7.45779 7.84665 7.91783 8.43181 8.47780 9.04134 9.38776 9.86576 10.65016 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.056991 B = 0.004286 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.190346 B = 6531.274121 C = 6985.135650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.108 3.892 13 N -0.701 5.701 14 C 0.561 3.439 15 O -0.553 6.553 16 C -0.184 4.184 17 C -0.083 4.083 18 C -0.105 4.105 19 C -0.123 4.123 20 C -0.095 4.095 21 H 0.274 0.726 22 H 0.396 0.604 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.412 0.588 26 H 0.137 0.863 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.380 -15.552 0.090 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.020 4.020 13 N -0.354 5.354 14 C 0.348 3.652 15 O -0.433 6.433 16 C -0.187 4.187 17 C -0.103 4.103 18 C -0.142 4.142 19 C -0.160 4.160 20 C -0.132 4.132 21 H 0.084 0.916 22 H 0.230 0.770 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.250 0.750 26 H 0.155 0.845 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.213 -15.471 0.091 16.326 hybrid contribution 0.070 1.053 -0.024 1.055 sum 5.283 -14.418 0.067 15.356 Atomic orbital electron populations 1.69618 1.06028 1.28442 1.49381 1.25329 0.95664 0.99949 0.96786 0.85753 0.79684 0.80797 0.77832 1.19121 1.20602 1.20605 1.19789 0.93502 0.81986 1.48159 0.87603 1.41806 1.09494 1.04474 1.62606 1.19743 0.88292 0.84997 0.85586 1.90493 1.13708 1.86833 1.57363 1.20973 0.91925 0.85780 1.03321 1.45629 1.11652 1.04564 1.73566 1.17960 0.87889 0.82631 0.76673 1.90770 1.16230 1.85096 1.51187 1.21852 0.95718 0.94123 1.06970 1.23994 0.99600 0.93766 0.92941 1.21467 0.92506 0.98058 1.02203 1.22427 0.97796 0.94170 1.01626 1.21288 0.90935 0.98437 1.02567 0.91626 0.77018 0.89761 0.89754 0.74997 0.84513 0.90401 0.89795 0.90828 0.90559 0.90376 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 13.05 55.50 0.72 -23.24 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.73 5.29 -10.96 -0.06 -13.78 16 10 C 0.43 9.95 7.85 -10.98 -0.09 9.87 16 11 O -0.60 -15.42 15.24 5.55 0.08 -15.33 16 12 C 0.11 2.05 6.15 -5.19 -0.03 2.02 16 13 N -0.70 -12.30 5.52 -62.67 -0.35 -12.65 16 14 C 0.56 9.54 7.79 -12.67 -0.10 9.44 16 15 O -0.55 -10.99 16.77 5.26 0.09 -10.90 16 16 C -0.18 -2.44 6.10 -102.73 -0.63 -3.06 16 17 C -0.08 -0.94 10.43 -36.00 -0.38 -1.31 16 18 C -0.11 -0.85 6.80 -26.85 -0.18 -1.04 16 19 C -0.12 -1.01 7.16 -25.07 -0.18 -1.19 16 20 C -0.10 -1.02 6.01 -26.85 -0.16 -1.18 16 21 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 22 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 23 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 24 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 25 H 0.41 7.06 6.45 -40.82 -0.26 6.79 16 26 H 0.14 1.53 8.03 -52.49 -0.42 1.11 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.85 7.85 -51.93 -0.41 0.45 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -31.26 282.91 -6.13 -37.39 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -3.88 Total: 13.06 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.98 Total: 5.66 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.32 Total: -49.67 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.17 Total: -26.23 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.26 -6.13 -37.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343505467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.970 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds