Wall clock time and date at job start Sun Mar 29 2020 21:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00070 * 2 1 4 4 H 1.48499 * 109.47465 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47234 * 299.99699 * 3 2 1 6 6 H 1.48510 * 109.46964 * 59.99723 * 3 2 1 7 7 C 1.37881 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00019 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99614 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47067 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47316 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46947 * 180.02562 * 11 10 9 13 13 C 1.33912 * 124.18662 * 269.95896 * 12 11 10 14 14 O 1.21536 * 123.78587 * 0.02562 * 13 12 11 15 15 N 1.34805 * 112.43799 * 180.02562 * 13 12 11 16 16 C 1.46560 * 106.19978 * 359.97438 * 15 13 12 17 17 C 1.52226 * 122.03227 * 143.60237 * 16 15 13 18 18 C 1.52227 * 122.03167 * 216.39530 * 16 15 13 19 19 C 1.35024 * 124.18594 * 90.00420 * 12 11 10 20 20 O 1.21233 * 127.36785 * 359.97438 * 19 12 11 21 21 H 0.96996 * 120.00234 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47136 * 60.00269 * 9 7 2 23 23 H 1.08999 * 109.47573 * 299.99996 * 9 7 2 24 24 H 1.09000 * 109.46947 * 60.00124 * 10 9 7 25 25 H 1.09005 * 109.47311 * 300.00289 * 10 9 7 26 26 H 1.08996 * 109.46581 * 60.00316 * 11 10 9 27 27 H 1.08994 * 109.46999 * 299.99880 * 11 10 9 28 28 H 0.96998 * 126.90080 * 180.02562 * 15 13 12 29 29 H 1.08997 * 117.52193 * 218.79151 * 17 16 15 30 30 H 1.09004 * 117.52085 * 3.92178 * 17 16 15 31 31 H 1.09001 * 117.52105 * 356.08054 * 18 16 15 32 32 H 1.09002 * 117.51576 * 141.16636 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4803 -4.9871 0.0033 12 7 2.4324 -6.1006 0.0049 13 6 2.9216 -6.6739 -1.1020 14 8 2.6259 -6.3286 -2.2292 15 7 3.7788 -7.6770 -0.8261 16 6 3.8526 -7.7614 0.6352 17 6 3.9837 -9.0928 1.3615 18 6 5.1482 -8.0981 1.3601 19 6 2.9246 -6.6763 1.1227 20 8 2.6747 -6.3836 2.2723 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5574 -0.8880 23 1 0.6247 -2.5563 0.8919 24 1 2.8719 -3.6035 0.8927 25 1 2.8721 -3.6051 -0.8873 26 1 0.8541 -5.0453 -0.8869 27 1 0.8534 -5.0443 0.8931 28 1 4.2523 -8.2311 -1.4661 29 1 3.4279 -9.2164 2.2909 30 1 4.0876 -9.9908 0.7523 31 1 6.0180 -8.3418 0.7500 32 1 5.3587 -7.5669 2.2883 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348469991.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:56 Heat of formation + Delta-G solvation = -26.229068 kcal Electronic energy + Delta-G solvation = -16652.477562 eV Core-core repulsion = 13807.597310 eV Total energy + Delta-G solvation = -2844.880252 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.34397 -38.62518 -37.46254 -35.77557 -34.25458 -32.90688 -31.22692 -27.37887 -24.91006 -23.63962 -23.03930 -21.82038 -20.69874 -20.08507 -17.99998 -16.62060 -16.47600 -16.24283 -16.08486 -15.21687 -14.72409 -14.38774 -14.07087 -14.01440 -13.86830 -12.67889 -12.24268 -12.07610 -11.85077 -11.64488 -11.47954 -11.03707 -10.85697 -10.83918 -10.51922 -10.16260 -9.79670 -9.75181 -9.33806 -9.26049 -8.98153 -8.33525 -5.98386 -4.00467 1.49769 2.29072 2.89676 3.08676 3.33510 3.40578 3.40955 3.45326 3.80795 4.13212 4.37646 4.48392 4.96059 5.12368 5.18430 5.37703 5.38237 5.59153 5.65921 5.74247 5.76086 6.02148 6.53056 6.66777 6.76178 7.02591 7.15449 7.45183 7.66260 7.79314 8.00215 8.16381 8.42948 9.05536 9.63383 11.13147 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039231 B = 0.005090 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.556846 B = 5499.159530 C = 5680.353222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.115 3.885 12 N -0.569 5.569 13 C 0.705 3.295 14 O -0.535 6.535 15 N -0.699 5.699 16 C 0.020 3.980 17 C -0.139 4.139 18 C -0.139 4.139 19 C 0.558 3.442 20 O -0.463 6.463 21 H 0.260 0.740 22 H 0.021 0.979 23 H 0.020 0.980 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.436 0.564 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.736 -19.540 1.962 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.162 4.162 11 C -0.004 4.004 12 N -0.314 5.314 13 C 0.406 3.594 14 O -0.407 6.407 15 N -0.362 5.362 16 C -0.072 4.072 17 C -0.178 4.178 18 C -0.177 4.177 19 C 0.345 3.655 20 O -0.333 6.333 21 H 0.070 0.930 22 H 0.039 0.961 23 H 0.038 0.962 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.280 0.720 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.168 -18.948 1.962 20.727 hybrid contribution 0.675 0.712 -0.389 1.055 sum 8.843 -18.237 1.572 20.328 Atomic orbital electron populations 1.69967 1.06033 1.26537 1.50889 1.25011 0.94860 0.99262 0.95278 0.86521 0.80103 0.83725 0.77570 1.19771 1.20976 1.20987 1.21225 0.93062 0.90872 1.50553 0.92649 1.19041 0.93799 0.90842 0.97608 1.22013 0.99955 0.93048 1.01155 1.22127 0.90223 0.83727 1.04355 1.46609 1.43576 1.34107 1.07065 1.15903 0.79233 0.79678 0.84542 1.91029 1.63032 1.66271 1.20398 1.44864 1.48618 1.37454 1.05279 1.21100 1.03458 1.00324 0.82337 1.23288 1.01124 0.91368 1.02020 1.23294 0.91017 1.01270 1.02158 1.19481 0.79743 0.81411 0.84897 1.90799 1.59739 1.65038 1.17712 0.93019 0.96101 0.96191 0.92833 0.92581 0.88760 0.88980 0.72032 0.86461 0.86871 0.86810 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 10 C -0.12 -2.68 5.48 -26.73 -0.15 -2.83 16 11 C 0.11 2.10 5.71 -4.04 -0.02 2.08 16 12 N -0.57 -9.26 2.61 -120.83 -0.32 -9.58 16 13 C 0.71 11.04 8.63 -87.66 -0.76 10.28 16 14 O -0.53 -10.22 17.49 5.33 0.09 -10.12 16 15 N -0.70 -7.51 6.59 -54.36 -0.36 -7.87 16 16 C 0.02 0.21 3.20 -133.64 -0.43 -0.22 16 17 C -0.14 -0.91 10.41 -27.05 -0.28 -1.19 16 18 C -0.14 -0.97 10.41 -27.05 -0.28 -1.25 16 19 C 0.56 8.24 8.08 -10.79 -0.09 8.15 16 20 O -0.46 -7.90 17.78 5.60 0.10 -7.80 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.09 1.71 7.86 -51.93 -0.41 1.30 16 27 H 0.09 1.62 8.01 -51.93 -0.42 1.20 16 28 H 0.44 3.31 8.96 -40.82 -0.37 2.94 16 29 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 286.10 15.07 4.31 4.31 Total: -1.00 -34.39 286.10 -7.12 -41.52 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.11 Total: -2.71 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.55 Total: 1.71 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.06 Total: -43.97 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.19 Total: -17.93 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.39 -7.12 -41.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348469991.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.288 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds