Wall clock time and date at job start Sun Mar 29 2020 21:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00070 * 2 1 4 4 H 1.48499 * 109.47465 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47234 * 299.99699 * 3 2 1 6 6 H 1.48510 * 109.46964 * 59.99723 * 3 2 1 7 7 C 1.37881 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00019 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99614 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47067 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47316 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46947 * 180.02562 * 11 10 9 13 13 C 1.33912 * 124.18662 * 269.95896 * 12 11 10 14 14 O 1.21536 * 123.78587 * 0.02562 * 13 12 11 15 15 N 1.34805 * 112.43799 * 180.02562 * 13 12 11 16 16 C 1.46560 * 106.19978 * 359.97438 * 15 13 12 17 17 C 1.52226 * 122.03227 * 143.60237 * 16 15 13 18 18 C 1.52227 * 122.03167 * 216.39530 * 16 15 13 19 19 C 1.35024 * 124.18594 * 90.00420 * 12 11 10 20 20 O 1.21233 * 127.36785 * 359.97438 * 19 12 11 21 21 H 0.96996 * 120.00234 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47136 * 60.00269 * 9 7 2 23 23 H 1.08999 * 109.47573 * 299.99996 * 9 7 2 24 24 H 1.09000 * 109.46947 * 60.00124 * 10 9 7 25 25 H 1.09005 * 109.47311 * 300.00289 * 10 9 7 26 26 H 1.08996 * 109.46581 * 60.00316 * 11 10 9 27 27 H 1.08994 * 109.46999 * 299.99880 * 11 10 9 28 28 H 0.96998 * 126.90080 * 180.02562 * 15 13 12 29 29 H 1.08997 * 117.52193 * 218.79151 * 17 16 15 30 30 H 1.09004 * 117.52085 * 3.92178 * 17 16 15 31 31 H 1.09001 * 117.52105 * 356.08054 * 18 16 15 32 32 H 1.09002 * 117.51576 * 141.16636 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4803 -4.9871 0.0033 12 7 2.4324 -6.1006 0.0049 13 6 2.9216 -6.6739 -1.1020 14 8 2.6259 -6.3286 -2.2292 15 7 3.7788 -7.6770 -0.8261 16 6 3.8526 -7.7614 0.6352 17 6 3.9837 -9.0928 1.3615 18 6 5.1482 -8.0981 1.3601 19 6 2.9246 -6.6763 1.1227 20 8 2.6747 -6.3836 2.2723 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5574 -0.8880 23 1 0.6247 -2.5563 0.8919 24 1 2.8719 -3.6035 0.8927 25 1 2.8721 -3.6051 -0.8873 26 1 0.8541 -5.0453 -0.8869 27 1 0.8534 -5.0443 0.8931 28 1 4.2523 -8.2311 -1.4661 29 1 3.4279 -9.2164 2.2909 30 1 4.0876 -9.9908 0.7523 31 1 6.0180 -8.3418 0.7500 32 1 5.3587 -7.5669 2.2883 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348469991.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:55 Heat of formation + Delta-G solvation = -51.075021 kcal Electronic energy + Delta-G solvation = -16653.554964 eV Core-core repulsion = 13807.597310 eV Total energy + Delta-G solvation = -2845.957653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.46051 -39.82543 -38.42227 -37.18589 -35.90546 -34.44181 -32.93000 -29.17790 -26.33206 -25.23500 -23.55870 -23.11999 -22.28867 -21.43273 -19.14641 -18.50993 -17.74592 -17.50297 -17.03446 -16.67486 -16.36555 -15.80554 -15.65819 -15.27128 -14.70473 -14.50991 -14.12299 -13.36098 -13.05950 -12.83751 -12.74528 -12.56521 -12.45985 -12.36321 -12.13508 -11.73561 -11.61639 -11.38965 -11.20485 -10.75233 -10.58998 -10.15942 -8.23070 -6.34477 0.41529 1.14070 1.38624 1.39224 1.52669 1.86808 1.98882 2.39502 2.73891 2.86773 3.10187 3.39199 3.79638 3.80078 4.08952 4.21473 4.29022 4.39077 4.55981 4.68004 4.83496 4.90813 4.97185 5.04075 5.12188 5.43278 5.61712 5.75089 5.77931 6.00590 6.18705 6.33988 6.79964 7.04770 7.34494 8.89152 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039231 B = 0.005090 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.556846 B = 5499.159530 C = 5680.353222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.104 4.104 11 C 0.124 3.876 12 N -0.578 5.578 13 C 0.699 3.301 14 O -0.579 6.579 15 N -0.670 5.670 16 C -0.007 4.007 17 C -0.109 4.109 18 C -0.119 4.119 19 C 0.549 3.451 20 O -0.496 6.496 21 H 0.265 0.735 22 H 0.000 1.000 23 H 0.002 0.998 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.453 0.547 29 H 0.119 0.881 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 -21.006 2.364 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.143 4.143 11 C 0.004 3.996 12 N -0.322 5.322 13 C 0.400 3.600 14 O -0.455 6.455 15 N -0.333 5.333 16 C -0.098 4.098 17 C -0.147 4.147 18 C -0.157 4.157 19 C 0.338 3.662 20 O -0.368 6.368 21 H 0.074 0.926 22 H 0.018 0.982 23 H 0.020 0.980 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.301 0.699 29 H 0.137 0.863 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.361 -20.482 2.379 23.076 hybrid contribution 0.009 1.103 -0.460 1.195 sum 10.370 -19.379 1.919 22.063 Atomic orbital electron populations 1.70087 1.07709 1.27886 1.51332 1.25966 0.95832 1.03328 0.94483 0.85368 0.78901 0.78596 0.77992 1.18869 1.20126 1.20016 1.21630 0.93382 0.92338 1.51101 0.92602 1.18909 0.94128 0.92247 0.95611 1.21695 0.98779 0.93432 1.00372 1.21735 0.90285 0.83189 1.04441 1.46583 1.43558 1.33712 1.08385 1.16047 0.79833 0.80503 0.83594 1.90996 1.64850 1.67914 1.21789 1.44652 1.46800 1.35713 1.06167 1.21195 1.05499 1.01602 0.81550 1.23548 0.99457 0.90391 1.01346 1.23547 0.90739 0.99982 1.01423 1.20237 0.79849 0.82035 0.84056 1.90774 1.61044 1.66307 1.18649 0.92579 0.98211 0.97992 0.93199 0.93474 0.89057 0.88589 0.69929 0.86263 0.83565 0.83819 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 45.52 29.54 68.60 2.03 47.54 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.55 -32.52 9.11 25.60 0.23 -32.29 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.59 4.97 29.85 0.15 1.73 16 10 C -0.10 -4.72 5.48 30.60 0.17 -4.55 16 11 C 0.12 4.73 5.71 86.38 0.49 5.23 16 12 N -0.58 -19.00 2.61 -773.23 -2.02 -21.02 16 13 C 0.70 21.68 8.63 179.31 1.55 23.23 16 14 O -0.58 -22.50 17.49 -3.83 -0.07 -22.57 16 15 N -0.67 -12.89 6.59 -444.17 -2.93 -15.82 16 16 C -0.01 -0.12 3.20 2.39 0.01 -0.11 16 17 C -0.11 -0.95 10.41 30.39 0.32 -0.63 16 18 C -0.12 -1.17 10.41 30.39 0.32 -0.85 16 19 C 0.55 15.89 8.08 87.67 0.71 16.60 16 20 O -0.50 -16.94 17.78 -2.88 -0.05 -16.99 16 21 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 22 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 23 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 24 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 25 H 0.05 2.18 8.14 -2.38 -0.02 2.17 16 26 H 0.09 3.50 7.86 -2.39 -0.02 3.48 16 27 H 0.10 3.53 8.01 -2.39 -0.02 3.51 16 28 H 0.45 5.48 8.96 -92.71 -0.83 4.65 16 29 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.15 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -76.98 286.10 1.95 -75.04 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: 0.30 Total: 2.29 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.40 Total: 8.93 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -4.66 Total: -94.24 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.12 Total: -39.55 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -76.98 1.95 -75.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348469991.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.960 kcal (2) G-P(sol) polarization free energy of solvation -76.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds