Wall clock time and date at job start Sun Mar 29 2020 21:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47243 * 180.02562 * 10 9 7 12 12 C 1.48523 * 111.00107 * 169.99647 * 11 10 9 13 13 C 1.54283 * 104.71036 * 200.72655 * 12 11 10 14 14 H 1.09003 * 112.64253 * 260.86764 * 13 12 11 15 15 C 1.51222 * 109.20813 * 134.87229 * 13 12 11 16 16 O 1.21217 * 125.31223 * 68.73867 * 15 13 12 17 17 N 1.35319 * 108.55552 * 248.91064 * 15 13 12 18 18 C 1.33814 * 114.73801 * 359.54254 * 17 15 13 19 19 O 1.21232 * 125.30416 * 180.31577 * 18 17 15 20 20 C 1.51215 * 109.38504 * 0.28723 * 18 17 15 21 21 H 1.08998 * 113.20833 * 237.59211 * 20 18 17 22 22 C 1.48520 * 111.00068 * 54.59874 * 11 10 9 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 25 25 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 26 26 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 27 27 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 28 28 H 1.09000 * 110.38584 * 319.53871 * 12 11 10 29 29 H 1.09000 * 110.38492 * 81.91948 * 12 11 10 30 30 H 0.97000 * 122.52056 * 179.82207 * 17 15 13 31 31 H 1.08993 * 110.39006 * 278.08577 * 22 11 10 32 32 H 1.08998 * 110.38970 * 40.46479 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 2.4273 -6.0779 -0.2420 13 6 1.5117 -7.2157 -0.7394 14 1 1.2573 -7.9245 0.0486 15 6 2.1508 -7.8808 -1.9378 16 8 3.1572 -8.5558 -1.9106 17 7 1.4137 -7.5911 -3.0350 18 6 0.3393 -6.8281 -2.8024 19 8 -0.4536 -6.4598 -3.6423 20 6 0.2680 -6.4974 -1.3286 21 1 -0.6645 -6.8145 -0.8618 22 6 0.5494 -4.9933 -1.1317 23 1 -0.4849 0.8400 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6240 -2.5567 -0.8903 26 1 2.8719 -3.6043 -0.8906 27 1 2.8720 -3.6043 0.8894 28 1 3.1626 -5.8211 -1.0046 29 1 2.9244 -6.3676 0.6837 30 1 1.6452 -7.9156 -3.9193 31 1 -0.3693 -4.4652 -0.8769 32 1 0.9950 -4.5693 -2.0316 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388068904.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:52 Heat of formation + Delta-G solvation = -63.590320 kcal Electronic energy + Delta-G solvation = -16885.972401 eV Core-core repulsion = 14039.472043 eV Total energy + Delta-G solvation = -2846.500357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.18948 -38.78430 -38.09114 -35.66917 -33.60500 -31.96984 -29.55644 -28.77140 -24.87981 -24.53515 -22.39310 -21.20153 -20.71546 -19.87173 -18.09262 -16.72771 -16.39887 -16.23788 -15.48421 -15.24700 -14.89497 -14.51533 -14.25852 -13.97670 -13.36941 -13.26728 -12.29755 -11.96842 -11.88457 -11.68572 -11.34467 -11.13313 -10.93561 -10.73505 -10.58631 -10.52525 -10.14427 -10.03836 -9.46537 -9.22389 -8.41137 -8.17842 -6.04946 -4.08113 1.27939 2.47457 2.54298 3.30912 3.35734 3.37691 3.80176 3.90067 4.09066 4.36216 4.47709 4.55588 5.00425 5.13531 5.21770 5.31484 5.64082 5.68262 5.74234 5.84686 6.00348 6.18492 6.23313 6.37423 6.75457 7.03640 7.11662 7.18774 7.61789 7.64010 7.75853 7.96489 8.34555 8.98040 9.56220 11.06315 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038468 B = 0.005466 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.701745 B = 5121.716532 C = 5450.478353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.050 3.950 11 N -0.503 5.503 12 C 0.046 3.954 13 C -0.126 4.126 14 H 0.139 0.861 15 C 0.539 3.461 16 O -0.477 6.477 17 N -0.687 5.687 18 C 0.536 3.464 19 O -0.477 6.477 20 C -0.125 4.125 21 H 0.140 0.860 22 C 0.053 3.947 23 H 0.262 0.738 24 H 0.027 0.973 25 H 0.019 0.981 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.097 0.903 30 H 0.412 0.588 31 H 0.106 0.894 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 -15.044 -2.321 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.077 4.077 11 N -0.227 5.227 12 C -0.083 4.083 13 C -0.147 4.147 14 H 0.157 0.843 15 C 0.327 3.673 16 O -0.347 6.347 17 N -0.353 5.353 18 C 0.323 3.677 19 O -0.347 6.347 20 C -0.147 4.147 21 H 0.158 0.842 22 C -0.075 4.075 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.252 0.748 31 H 0.125 0.875 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.157 -15.030 -2.067 15.215 hybrid contribution 1.033 0.856 -1.331 1.890 sum 2.190 -14.174 -3.398 14.739 Atomic orbital electron populations 1.69946 1.06031 1.26863 1.50246 1.24982 0.94842 0.99226 0.95122 0.86641 0.79583 0.83058 0.78623 1.20299 1.21216 1.20167 1.21111 0.92968 0.90939 1.51457 0.92759 1.19165 0.93943 0.90246 0.98015 1.22585 0.97281 0.88079 0.99752 1.65627 1.13712 1.03631 1.39719 1.22998 0.94137 0.89924 1.01254 1.22939 0.95678 0.99291 0.96841 0.84328 1.21102 0.82432 0.78130 0.85671 1.90794 1.22262 1.36040 1.85650 1.45109 1.27467 1.49416 1.13270 1.20720 0.79130 0.75699 0.92107 1.90820 1.41177 1.50696 1.52019 1.22983 1.01066 0.99321 0.91288 0.84190 1.22946 0.99731 0.90710 0.94117 0.92823 0.95428 0.96317 0.95664 0.91073 0.93507 0.88454 0.74846 0.87536 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.58 4.69 -27.88 -0.13 0.45 16 10 C 0.05 0.98 5.00 -3.83 -0.02 0.96 16 11 N -0.50 -8.06 5.49 -230.17 -1.26 -9.32 16 12 C 0.05 0.58 6.03 -2.25 -0.01 0.57 16 13 C -0.13 -1.30 4.13 -89.66 -0.37 -1.67 16 14 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.54 6.06 7.65 -10.49 -0.08 5.98 16 16 O -0.48 -6.58 18.02 5.61 0.10 -6.48 16 17 N -0.69 -7.14 5.52 -11.15 -0.06 -7.21 16 18 C 0.54 6.57 7.54 -11.16 -0.08 6.48 16 19 O -0.48 -7.37 18.02 5.60 0.10 -7.27 16 20 C -0.12 -1.40 4.17 -89.66 -0.37 -1.78 16 21 H 0.14 1.26 8.14 -51.93 -0.42 0.84 16 22 C 0.05 0.81 4.66 -2.25 -0.01 0.80 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.48 6.83 -51.93 -0.35 0.13 16 26 H 0.03 0.50 7.88 -51.93 -0.41 0.09 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.05 0.63 7.41 -51.93 -0.38 0.25 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.41 3.54 8.96 -40.82 -0.37 3.18 16 31 H 0.11 1.74 7.65 -51.93 -0.40 1.34 16 32 H 0.05 0.85 7.58 -51.93 -0.39 0.46 16 LS Contribution 272.69 15.07 4.11 4.11 Total: -1.00 -31.71 272.69 -6.75 -38.46 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -3.96 Total: -1.64 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.49 Total: -1.41 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.59 Total: -42.06 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.20 Total: -13.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.71 -6.75 -38.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388068904.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.128 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds