Wall clock time and date at job start Sun Mar 29 2020 21:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47243 * 180.02562 * 10 9 7 12 12 C 1.48523 * 111.00107 * 169.99647 * 11 10 9 13 13 C 1.54283 * 104.71036 * 200.72655 * 12 11 10 14 14 H 1.09003 * 112.64253 * 260.86764 * 13 12 11 15 15 C 1.51222 * 109.20813 * 134.87229 * 13 12 11 16 16 O 1.21217 * 125.31223 * 68.73867 * 15 13 12 17 17 N 1.35319 * 108.55552 * 248.91064 * 15 13 12 18 18 C 1.33814 * 114.73801 * 359.54254 * 17 15 13 19 19 O 1.21232 * 125.30416 * 180.31577 * 18 17 15 20 20 C 1.51215 * 109.38504 * 0.28723 * 18 17 15 21 21 H 1.08998 * 113.20833 * 237.59211 * 20 18 17 22 22 C 1.48520 * 111.00068 * 54.59874 * 11 10 9 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 25 25 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 26 26 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 27 27 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 28 28 H 1.09000 * 110.38584 * 319.53871 * 12 11 10 29 29 H 1.09000 * 110.38492 * 81.91948 * 12 11 10 30 30 H 0.97000 * 122.52056 * 179.82207 * 17 15 13 31 31 H 1.08993 * 110.39006 * 278.08577 * 22 11 10 32 32 H 1.08998 * 110.38970 * 40.46479 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 2.4273 -6.0779 -0.2420 13 6 1.5117 -7.2157 -0.7394 14 1 1.2573 -7.9245 0.0486 15 6 2.1508 -7.8808 -1.9378 16 8 3.1572 -8.5558 -1.9106 17 7 1.4137 -7.5911 -3.0350 18 6 0.3393 -6.8281 -2.8024 19 8 -0.4536 -6.4598 -3.6423 20 6 0.2680 -6.4974 -1.3286 21 1 -0.6645 -6.8145 -0.8618 22 6 0.5494 -4.9933 -1.1317 23 1 -0.4849 0.8400 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6240 -2.5567 -0.8903 26 1 2.8719 -3.6043 -0.8906 27 1 2.8720 -3.6043 0.8894 28 1 3.1626 -5.8211 -1.0046 29 1 2.9244 -6.3676 0.6837 30 1 1.6452 -7.9156 -3.9193 31 1 -0.3693 -4.4652 -0.8769 32 1 0.9950 -4.5693 -2.0316 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388068904.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:51 Heat of formation + Delta-G solvation = -88.961454 kcal Electronic energy + Delta-G solvation = -16887.072575 eV Core-core repulsion = 14039.472043 eV Total energy + Delta-G solvation = -2847.600532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.18407 -39.82548 -39.31091 -36.77821 -35.42326 -33.53454 -30.80693 -30.26471 -26.64671 -25.59328 -23.93920 -22.23324 -21.69536 -21.39613 -19.09245 -18.55543 -17.56779 -17.29402 -16.66643 -16.51860 -16.47648 -15.93407 -15.48218 -15.12626 -14.71881 -14.64494 -14.11381 -13.46427 -13.28662 -12.95716 -12.75935 -12.64739 -12.48240 -12.26696 -11.84616 -11.83745 -11.51789 -11.33736 -11.27448 -11.14640 -10.54497 -9.53609 -8.19907 -6.30877 0.30113 1.41266 1.43556 1.50354 1.51655 1.62977 2.40675 2.85603 2.87229 3.13207 3.14170 3.24680 3.52263 4.00493 4.17474 4.20435 4.44359 4.45955 4.64447 4.81615 4.83212 4.87725 4.95431 5.03166 5.42144 5.44441 5.56977 5.76049 5.80597 6.00981 6.09151 6.26468 6.71423 6.85797 7.38361 8.91703 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038468 B = 0.005466 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.701745 B = 5121.716532 C = 5450.478353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.031 3.969 10 C 0.066 3.934 11 N -0.506 5.506 12 C 0.043 3.957 13 C -0.110 4.110 14 H 0.178 0.822 15 C 0.548 3.452 16 O -0.498 6.498 17 N -0.677 5.677 18 C 0.542 3.458 19 O -0.511 6.511 20 C -0.113 4.113 21 H 0.171 0.829 22 C 0.050 3.950 23 H 0.264 0.736 24 H 0.000 1.000 25 H -0.003 1.003 26 H 0.023 0.977 27 H 0.076 0.924 28 H 0.039 0.961 29 H 0.118 0.882 30 H 0.422 0.578 31 H 0.087 0.913 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -16.071 -1.816 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.062 4.062 11 N -0.230 5.230 12 C -0.085 4.085 13 C -0.131 4.131 14 H 0.195 0.805 15 C 0.336 3.664 16 O -0.370 6.370 17 N -0.343 5.343 18 C 0.331 3.669 19 O -0.384 6.384 20 C -0.134 4.134 21 H 0.188 0.812 22 C -0.078 4.078 23 H 0.073 0.927 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.136 0.864 30 H 0.262 0.738 31 H 0.105 0.895 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.171 -16.084 -1.565 16.305 hybrid contribution 0.720 1.145 -1.506 2.024 sum 2.891 -14.938 -3.071 15.523 Atomic orbital electron populations 1.70080 1.07713 1.27852 1.51286 1.25907 0.95712 1.03167 0.94652 0.85541 0.78309 0.78314 0.79129 1.19466 1.20896 1.19023 1.21599 0.93552 0.92347 1.51076 0.92187 1.18987 0.94256 0.91865 0.95555 1.22211 0.95905 0.88247 0.99834 1.65541 1.14237 1.03033 1.40155 1.23091 0.93911 0.89182 1.02294 1.22989 0.93993 0.98869 0.97287 0.80486 1.21141 0.81855 0.77521 0.85845 1.90802 1.23167 1.37113 1.85871 1.44992 1.26726 1.48685 1.13874 1.20796 0.78836 0.75154 0.92149 1.90814 1.42530 1.52087 1.52985 1.22962 1.03108 0.96363 0.90974 0.81190 1.22843 0.98591 0.93496 0.92906 0.92740 0.98143 0.98498 0.95925 0.90569 0.94221 0.86388 0.73776 0.89469 0.95158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.57 4.69 29.85 0.14 1.71 16 10 C 0.07 2.58 5.00 86.30 0.43 3.01 16 11 N -0.51 -15.76 5.49 -882.11 -4.84 -20.60 16 12 C 0.04 1.00 6.03 86.42 0.52 1.52 16 13 C -0.11 -1.90 4.13 -10.17 -0.04 -1.95 16 14 H 0.18 1.84 8.14 -2.39 -0.02 1.82 16 15 C 0.55 10.86 7.65 87.74 0.67 11.53 16 16 O -0.50 -12.47 18.02 -2.83 -0.05 -12.52 16 17 N -0.68 -12.82 5.52 -426.25 -2.35 -15.17 16 18 C 0.54 12.55 7.54 87.97 0.66 13.21 16 19 O -0.51 -15.60 18.02 -2.88 -0.05 -15.65 16 20 C -0.11 -2.30 4.17 -10.17 -0.04 -2.34 16 21 H 0.17 2.52 8.14 -2.39 -0.02 2.50 16 22 C 0.05 1.52 4.66 86.43 0.40 1.93 16 23 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 24 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 25 H 0.00 -0.18 6.83 -2.39 -0.02 -0.20 16 26 H 0.02 0.89 7.88 -2.38 -0.02 0.87 16 27 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.04 0.99 7.41 -2.39 -0.02 0.97 16 29 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.42 6.57 8.96 -92.71 -0.83 5.74 16 31 H 0.09 2.96 7.65 -2.39 -0.02 2.94 16 32 H 0.03 1.04 7.58 -2.39 -0.02 1.02 16 Total: -1.00 -69.24 272.69 -1.23 -70.47 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 0.31 Total: 4.30 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 3.44 Total: -0.97 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -6.91 Total: -91.35 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.10 Total: -28.18 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -69.24 -1.23 -70.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388068904.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.493 kcal (2) G-P(sol) polarization free energy of solvation -69.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds