Wall clock time and date at job start Sun Mar 29 2020 22:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30015 * 127.33713 * 2 1 4 4 O 1.20658 * 112.30289 * 179.67974 * 3 2 1 5 5 C 1.33488 * 113.15744 * 0.50925 * 4 3 2 6 6 C 1.37367 * 106.33950 * 359.51382 * 5 4 3 7 7 C 1.47400 * 128.56254 * 180.24692 * 6 5 4 8 8 O 1.21606 * 119.99814 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00046 * 0.02562 * 7 6 5 10 10 C 1.46503 * 119.99823 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47077 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47332 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47190 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00438 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99879 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00065 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99888 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47081 * 90.00336 * 17 15 13 19 19 H 1.48501 * 109.46983 * 210.00215 * 17 15 13 20 20 H 1.48498 * 109.47174 * 329.99887 * 17 15 13 21 21 H 1.09000 * 109.47074 * 270.02603 * 1 2 3 22 22 H 1.09004 * 109.46787 * 30.02678 * 1 2 3 23 23 H 1.09000 * 109.46867 * 150.02256 * 1 2 3 24 24 H 1.08002 * 126.83351 * 179.78327 * 5 4 3 25 25 H 0.97000 * 120.00227 * 359.97438 * 9 7 6 26 26 H 1.09004 * 109.46941 * 299.99623 * 10 9 7 27 27 H 1.08998 * 109.47287 * 59.99820 * 10 9 7 28 28 H 1.08996 * 109.47066 * 299.99896 * 11 10 9 29 29 H 1.08998 * 109.47226 * 59.99762 * 11 10 9 30 30 H 1.09004 * 109.46924 * 299.99749 * 12 11 10 31 31 H 1.08998 * 109.47048 * 59.99789 * 12 11 10 32 32 H 0.96998 * 120.00001 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0062 5 6 3.6495 -0.6007 0.0006 6 6 2.3991 -1.1696 0.0004 7 6 2.0401 -2.5992 0.0003 8 8 0.8706 -2.9324 -0.0004 9 7 3.0080 -3.5371 0.0009 10 6 2.6511 -4.9580 0.0002 11 6 3.9259 -5.8040 0.0017 12 6 3.5532 -7.2879 0.0016 13 6 4.8088 -8.1212 0.0037 14 1 5.7759 -7.6405 0.0046 15 6 4.7229 -9.4973 0.0035 16 7 5.8188 -10.2246 0.0048 17 14 3.0502 -10.3287 0.0012 18 1 2.6088 -10.5490 -1.3995 19 1 3.1457 -11.6349 0.7013 20 1 2.0663 -9.4633 0.7001 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8902 -0.5135 24 1 4.5967 -1.1195 0.0011 25 1 3.9409 -3.2714 0.0010 26 1 2.0635 -5.1854 0.8896 27 1 2.0650 -5.1850 -0.8904 28 1 4.5139 -5.5766 -0.8875 29 1 4.5116 -5.5769 0.8924 30 1 2.9654 -7.5150 0.8910 31 1 2.9673 -7.5153 -0.8890 32 1 5.7583 -11.1927 0.0050 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402505205.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:42 Heat of formation + Delta-G solvation = -17.548548 kcal Electronic energy + Delta-G solvation = -15969.441990 eV Core-core repulsion = 13124.938154 eV Total energy + Delta-G solvation = -2844.503836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.96680 -40.63571 -37.04010 -35.49465 -35.20707 -33.70418 -32.69824 -29.86021 -28.95453 -25.99984 -24.16019 -22.46704 -22.09216 -21.39867 -19.33402 -18.81878 -18.78447 -17.50878 -17.02700 -16.68991 -16.26282 -15.55420 -15.39622 -14.77382 -14.69702 -14.25889 -14.12629 -13.79359 -13.64146 -13.43840 -12.72980 -12.68870 -12.36079 -11.93903 -11.77827 -11.57425 -11.31224 -11.16860 -10.98392 -10.81411 -10.74399 -10.12740 -8.27776 -6.31388 0.06621 0.71146 1.38440 1.40415 1.51539 1.86280 2.11812 2.29620 2.37821 2.99921 3.08453 3.30813 3.81221 3.94319 4.13704 4.23249 4.42396 4.52136 4.59532 4.61335 4.75803 4.91188 4.91862 5.06729 5.14986 5.33800 5.51424 5.58738 5.67206 6.29171 6.46956 6.77343 7.11049 7.18838 7.33684 8.88542 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.052679 B = 0.004005 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.395286 B = 6989.104689 C = 7489.447473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.381 5.381 4 O 0.097 5.903 5 C 0.035 3.965 6 C -0.283 4.283 7 C 0.593 3.407 8 O -0.572 6.572 9 N -0.705 5.705 10 C 0.128 3.872 11 C -0.101 4.101 12 C -0.014 4.014 13 C -0.529 4.529 14 H 0.039 0.961 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.946 3.054 18 H -0.268 1.268 19 H -0.287 1.287 20 H -0.247 1.247 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.277 0.723 25 H 0.416 0.584 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.021 0.979 31 H 0.020 0.980 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 20.353 0.019 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 N -0.090 5.090 4 O 0.040 5.960 5 C -0.047 4.047 6 C -0.291 4.291 7 C 0.380 3.620 8 O -0.453 6.453 9 N -0.357 5.357 10 C 0.004 3.996 11 C -0.139 4.139 12 C -0.052 4.052 13 C -0.567 4.567 14 H 0.058 0.942 15 C -0.193 4.193 16 N -0.592 5.592 17 Si 0.769 3.231 18 H -0.193 1.193 19 H -0.213 1.213 20 H -0.170 1.170 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.102 0.898 24 H 0.292 0.708 25 H 0.254 0.746 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.087 21.256 0.019 22.406 hybrid contribution 0.069 -1.654 -0.014 1.656 sum -7.018 19.602 0.005 20.820 Atomic orbital electron populations 1.20285 0.84380 1.04390 1.04351 1.25211 0.99822 0.86701 0.99123 1.73690 0.89860 1.23956 1.21472 1.84549 1.20857 1.23971 1.66659 1.27299 1.00970 0.82965 0.93507 1.22251 0.94315 0.94493 1.18041 1.17080 0.85146 0.83892 0.75897 1.90769 1.19929 1.82684 1.51922 1.45735 1.09925 1.05961 1.74087 1.21366 0.97821 0.78618 1.01776 1.21489 0.95695 0.94150 1.02522 1.19479 0.95510 0.93351 0.96849 1.21480 0.93564 0.91642 1.50032 0.94222 1.25976 1.00472 0.98482 0.94322 1.70058 1.30150 1.06165 1.52820 0.85723 0.80302 0.77899 0.79134 1.19320 1.21251 1.17024 0.89141 0.89121 0.89822 0.70774 0.74648 0.92101 0.92020 0.91339 0.91363 0.96091 0.96199 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.15 71.24 0.72 -0.77 16 2 C 0.05 1.20 7.58 45.16 0.34 1.54 16 3 N -0.38 -8.37 12.01 -44.78 -0.54 -8.91 16 4 O 0.10 1.66 11.06 77.03 0.85 2.51 16 5 C 0.03 0.43 11.85 67.61 0.80 1.23 16 6 C -0.28 -5.81 6.47 -18.74 -0.12 -5.94 16 7 C 0.59 15.20 7.81 86.66 0.68 15.88 16 8 O -0.57 -19.20 15.69 -4.05 -0.06 -19.27 16 9 N -0.71 -15.62 5.55 -466.40 -2.59 -18.20 16 10 C 0.13 3.63 5.67 86.38 0.49 4.12 16 11 C -0.10 -3.29 5.27 30.59 0.16 -3.13 16 12 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 13 C -0.53 -29.02 9.66 25.60 0.25 -28.77 16 14 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 15 C 0.00 0.24 5.47 84.65 0.46 0.71 16 16 N -0.95 -58.42 13.96 21.45 0.30 -58.12 16 17 Si 0.95 43.37 27.47 68.60 1.88 45.25 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 21 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.08 1.85 7.11 -2.39 -0.02 1.83 16 24 H 0.28 0.23 7.68 -2.91 -0.02 0.21 16 25 H 0.42 6.03 7.66 -92.71 -0.71 5.32 16 26 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.02 0.90 7.20 -2.38 -0.02 0.88 16 31 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -72.97 282.84 4.12 -68.85 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 0.37 Total: 3.50 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 3.90 Total: -15.61 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -2.83 Total: -85.24 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.79 Total: -16.75 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Total: -72.97 4.12 -68.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402505205.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.306 kcal (2) G-P(sol) polarization free energy of solvation -72.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds