Wall clock time and date at job start Sun Mar 29 2020 21:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48497 * 109.47437 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47195 * 299.99786 * 3 2 1 6 6 H 1.48498 * 109.47240 * 59.99316 * 3 2 1 7 7 C 1.37881 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99670 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99905 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00016 * 180.02562 * 10 9 7 12 12 O 1.21593 * 120.00095 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00182 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00170 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.46999 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.46697 * 180.02562 * 15 14 13 17 17 C 1.34511 * 125.79278 * 90.00315 * 16 15 14 18 18 C 1.41386 * 106.84141 * 180.02562 * 17 16 15 19 19 C 1.34507 * 106.84010 * 0.02562 * 18 17 16 20 20 O 1.34304 * 108.42311 * 359.97438 * 19 18 17 21 21 H 0.96994 * 120.00248 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47140 * 60.00554 * 9 7 2 23 23 H 1.08998 * 109.47563 * 300.00363 * 9 7 2 24 24 H 0.96998 * 120.00114 * 359.97438 * 10 9 7 25 25 H 0.96998 * 119.99947 * 359.97438 * 13 11 10 26 26 H 1.09001 * 109.46968 * 60.00024 * 14 13 11 27 27 H 1.08995 * 109.47318 * 299.99773 * 14 13 11 28 28 H 1.08994 * 109.46939 * 60.00018 * 15 14 13 29 29 H 1.09003 * 109.47242 * 299.99604 * 15 14 13 30 30 H 1.07999 * 126.58024 * 359.97438 * 17 16 15 31 31 H 1.08004 * 126.57483 * 179.97438 * 18 17 16 32 32 H 1.08004 * 125.79019 * 180.26381 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 1.7538 -4.8834 0.0015 12 8 0.5584 -5.1056 0.0006 13 7 2.6296 -5.9077 0.0031 14 6 2.1412 -7.2890 0.0034 15 6 3.3313 -8.2507 0.0047 16 6 2.8289 -9.6714 0.0043 17 6 2.5679 -10.4132 -1.0869 18 6 2.1210 -11.6737 -0.6281 19 6 2.1352 -11.6265 0.7160 20 8 2.5650 -10.4114 1.0936 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6240 -2.5567 0.8902 24 1 3.1567 -3.4355 0.0021 25 1 3.5832 -5.7305 0.0042 26 1 1.5368 -7.4608 -0.8873 27 1 1.5347 -7.4598 0.8927 28 1 3.9361 -8.0790 0.8951 29 1 3.9376 -8.0798 -0.8849 30 1 2.6777 -10.1049 -2.1161 31 1 1.8243 -12.5130 -1.2397 32 1 1.8535 -12.4310 1.3793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426416032.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:58 Heat of formation + Delta-G solvation = -25.523639 kcal Electronic energy + Delta-G solvation = -15751.296979 eV Core-core repulsion = 12906.447317 eV Total energy + Delta-G solvation = -2844.849662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.72595 -39.17634 -35.53921 -34.03981 -33.19045 -32.42902 -31.70932 -28.15352 -26.74235 -23.59345 -22.20017 -21.92584 -20.66370 -20.09588 -18.18170 -17.32099 -16.43475 -15.92592 -15.58279 -15.44072 -14.75897 -14.42655 -13.95081 -13.66302 -13.11536 -12.99948 -12.82467 -12.52413 -12.12632 -11.93889 -11.89411 -11.32735 -10.91155 -10.88510 -10.28785 -10.09475 -9.41887 -9.33294 -8.78300 -8.67061 -8.64278 -7.73977 -6.13596 -4.20032 1.53575 2.43296 2.76655 3.25338 3.31571 3.34739 3.45963 3.97279 4.34132 4.53005 4.77467 4.81581 4.88288 5.03320 5.18723 5.22544 5.29457 5.62845 5.67952 5.89323 5.91644 5.99189 6.32020 6.83248 6.96182 7.13284 7.53782 7.57317 7.59691 7.92560 8.06202 8.78799 8.96378 9.35280 9.50128 10.96772 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.082571 B = 0.003393 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.022231 B = 8250.205811 C = 8390.689128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.693 3.307 12 O -0.600 6.600 13 N -0.759 5.759 14 C 0.145 3.855 15 C -0.051 4.051 16 C -0.004 4.004 17 C -0.207 4.207 18 C -0.215 4.215 19 C -0.043 4.043 20 O -0.175 6.175 21 H 0.265 0.735 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.386 0.614 25 H 0.392 0.608 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.954 -19.895 -0.369 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.479 6.479 13 N -0.417 5.417 14 C 0.020 3.980 15 C -0.088 4.088 16 C -0.055 4.055 17 C -0.226 4.226 18 C -0.234 4.234 19 C -0.111 4.111 20 O -0.071 6.071 21 H 0.075 0.925 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.219 0.781 25 H 0.225 0.775 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.167 0.833 31 H 0.165 0.835 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 7.667 -19.818 -0.074 21.249 hybrid contribution 1.184 0.818 -0.216 1.455 sum 8.851 -19.000 -0.290 20.963 Atomic orbital electron populations 1.69989 1.06093 1.27146 1.49068 1.24954 0.94916 0.99422 0.94808 0.86355 0.79789 0.82984 0.77716 1.19669 1.20825 1.20831 1.21267 0.93299 0.90428 1.52936 0.91888 1.18991 0.87806 0.81077 0.97638 1.45710 1.10789 1.04374 1.77247 1.16129 0.85169 0.81048 0.78420 1.90882 1.14265 1.84230 1.58526 1.45089 1.08882 1.04964 1.82730 1.20992 0.94775 0.79331 1.02869 1.20296 0.98106 0.85621 1.04822 1.22145 1.04617 0.94476 0.84263 1.21641 1.06906 0.94494 0.99598 1.21845 1.07280 0.99387 0.94857 1.24029 1.04112 0.86794 0.96161 1.84031 1.65095 1.22867 1.35080 0.92522 0.95723 0.95730 0.78146 0.77504 0.91443 0.91589 0.89341 0.88178 0.83339 0.83485 0.78159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.22 5.43 -5.19 -0.03 7.19 16 10 N -0.73 -15.76 5.55 -66.41 -0.37 -16.12 16 11 C 0.69 14.55 8.57 -86.93 -0.74 13.81 16 12 O -0.60 -15.44 16.34 5.28 0.09 -15.35 16 13 N -0.76 -11.20 5.56 -65.22 -0.36 -11.57 16 14 C 0.15 1.92 5.66 -4.04 -0.02 1.90 16 15 C -0.05 -0.48 5.86 -27.88 -0.16 -0.64 16 16 C 0.00 -0.05 6.57 -35.63 -0.23 -0.28 16 17 C -0.21 -2.12 10.81 -39.70 -0.43 -2.55 16 18 C -0.21 -1.98 10.91 -39.70 -0.43 -2.42 16 19 C -0.04 -0.39 12.09 29.41 0.36 -0.03 16 20 O -0.17 -1.99 10.65 5.70 0.06 -1.93 16 21 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.39 7.04 8.34 -40.82 -0.34 6.70 16 25 H 0.39 4.37 8.49 -40.82 -0.35 4.02 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.20 1.03 8.06 -52.48 -0.42 0.60 16 LS Contribution 288.63 15.07 4.35 4.35 Total: -1.00 -34.66 288.63 -6.66 -41.32 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.03 Total: 5.51 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.12 Total: 3.48 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.00 Total: -53.32 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.15 Total: -17.28 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.66 -6.66 -41.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416032.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.800 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds