Wall clock time and date at job start Sun Mar 29 2020 21:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48497 * 109.47437 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47195 * 299.99786 * 3 2 1 6 6 H 1.48498 * 109.47240 * 59.99316 * 3 2 1 7 7 C 1.37881 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99670 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99905 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00016 * 180.02562 * 10 9 7 12 12 O 1.21593 * 120.00095 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00182 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00170 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.46999 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.46697 * 180.02562 * 15 14 13 17 17 C 1.34511 * 125.79278 * 90.00315 * 16 15 14 18 18 C 1.41386 * 106.84141 * 180.02562 * 17 16 15 19 19 C 1.34507 * 106.84010 * 0.02562 * 18 17 16 20 20 O 1.34304 * 108.42311 * 359.97438 * 19 18 17 21 21 H 0.96994 * 120.00248 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47140 * 60.00554 * 9 7 2 23 23 H 1.08998 * 109.47563 * 300.00363 * 9 7 2 24 24 H 0.96998 * 120.00114 * 359.97438 * 10 9 7 25 25 H 0.96998 * 119.99947 * 359.97438 * 13 11 10 26 26 H 1.09001 * 109.46968 * 60.00024 * 14 13 11 27 27 H 1.08995 * 109.47318 * 299.99773 * 14 13 11 28 28 H 1.08994 * 109.46939 * 60.00018 * 15 14 13 29 29 H 1.09003 * 109.47242 * 299.99604 * 15 14 13 30 30 H 1.07999 * 126.58024 * 359.97438 * 17 16 15 31 31 H 1.08004 * 126.57483 * 179.97438 * 18 17 16 32 32 H 1.08004 * 125.79019 * 180.26381 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 1.7538 -4.8834 0.0015 12 8 0.5584 -5.1056 0.0006 13 7 2.6296 -5.9077 0.0031 14 6 2.1412 -7.2890 0.0034 15 6 3.3313 -8.2507 0.0047 16 6 2.8289 -9.6714 0.0043 17 6 2.5679 -10.4132 -1.0869 18 6 2.1210 -11.6737 -0.6281 19 6 2.1352 -11.6265 0.7160 20 8 2.5650 -10.4114 1.0936 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6240 -2.5567 0.8902 24 1 3.1567 -3.4355 0.0021 25 1 3.5832 -5.7305 0.0042 26 1 1.5368 -7.4608 -0.8873 27 1 1.5347 -7.4598 0.8927 28 1 3.9361 -8.0790 0.8951 29 1 3.9376 -8.0798 -0.8849 30 1 2.6777 -10.1049 -2.1161 31 1 1.8243 -12.5130 -1.2397 32 1 1.8535 -12.4310 1.3793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426416032.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:57 Heat of formation + Delta-G solvation = -51.828009 kcal Electronic energy + Delta-G solvation = -15752.437622 eV Core-core repulsion = 12906.447317 eV Total energy + Delta-G solvation = -2845.990305 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.46471 -40.86702 -36.86463 -35.98676 -34.42337 -33.95362 -32.86577 -29.59181 -28.27238 -25.06826 -23.83744 -22.65745 -21.97199 -21.27835 -19.83441 -18.23645 -17.94923 -17.47423 -16.85679 -16.77270 -16.40728 -15.62592 -15.33499 -15.15174 -14.75667 -14.03982 -14.00639 -13.71827 -13.52002 -13.33553 -13.08652 -12.84522 -12.74354 -12.28866 -12.20020 -11.43250 -11.29095 -10.83356 -10.80585 -10.29762 -9.58950 -9.38616 -8.27052 -6.43420 0.77874 1.45000 1.46639 1.59702 1.67824 1.85597 2.22786 2.24318 2.41938 3.08124 3.53453 3.87632 3.92924 4.04478 4.17043 4.32311 4.48952 4.77505 4.90161 4.96788 5.08379 5.11480 5.25303 5.28407 5.48137 5.51491 5.63384 5.68930 5.86523 6.22895 6.28015 6.68879 7.25964 7.33437 7.72753 8.85693 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.082571 B = 0.003393 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.022231 B = 8250.205811 C = 8390.689128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.284 3.716 10 N -0.721 5.721 11 C 0.690 3.310 12 O -0.652 6.652 13 N -0.729 5.729 14 C 0.147 3.853 15 C -0.035 4.035 16 C -0.029 4.029 17 C -0.216 4.216 18 C -0.230 4.230 19 C -0.045 4.045 20 O -0.195 6.195 21 H 0.269 0.731 22 H -0.015 1.015 23 H -0.015 1.015 24 H 0.406 0.594 25 H 0.415 0.585 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.517 -20.255 -0.492 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.104 0.896 9 C 0.160 3.840 10 N -0.375 5.375 11 C 0.389 3.611 12 O -0.535 6.535 13 N -0.388 5.388 14 C 0.022 3.978 15 C -0.073 4.073 16 C -0.079 4.079 17 C -0.235 4.235 18 C -0.249 4.249 19 C -0.112 4.112 20 O -0.092 6.092 21 H 0.077 0.923 22 H 0.003 0.997 23 H 0.003 0.997 24 H 0.242 0.758 25 H 0.252 0.748 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.144 0.856 30 H 0.178 0.822 31 H 0.185 0.815 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 10.326 -20.231 -0.200 22.715 hybrid contribution 0.337 0.779 -0.181 0.868 sum 10.663 -19.452 -0.381 22.186 Atomic orbital electron populations 1.70152 1.08326 1.28505 1.50090 1.26089 0.95789 1.03951 0.93919 0.85073 0.79093 0.77179 0.77610 1.17515 1.20493 1.20544 1.21639 0.94376 0.90374 1.52681 0.89649 1.18426 0.88167 0.83421 0.93949 1.45270 1.10977 1.03674 1.77580 1.16328 0.85083 0.81705 0.77959 1.90848 1.16986 1.85012 1.60639 1.44776 1.09283 1.04215 1.80487 1.21066 0.96516 0.78883 1.01345 1.20205 0.96343 0.83848 1.06862 1.22371 1.05944 0.95122 0.84437 1.21983 1.06317 0.95008 1.00158 1.22209 1.07477 0.99795 0.95404 1.24787 1.02768 0.86639 0.96957 1.84020 1.65573 1.23859 1.35717 0.92258 0.99656 0.99746 0.75794 0.74780 0.92666 0.93608 0.87836 0.85592 0.82199 0.81511 0.74904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.99 42.36 29.54 68.60 2.03 44.39 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -30.23 9.28 25.60 0.24 -30.00 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.28 15.92 5.43 85.63 0.46 16.39 16 10 N -0.72 -31.23 5.55 -482.29 -2.68 -33.91 16 11 C 0.69 29.22 8.57 179.06 1.53 30.75 16 12 O -0.65 -34.83 16.34 -4.01 -0.07 -34.89 16 13 N -0.73 -20.64 5.56 -478.53 -2.66 -23.30 16 14 C 0.15 3.77 5.66 86.38 0.49 4.26 16 15 C -0.04 -0.59 5.86 29.85 0.18 -0.41 16 16 C -0.03 -0.58 6.57 24.83 0.16 -0.42 16 17 C -0.22 -4.10 10.81 22.19 0.24 -3.86 16 18 C -0.23 -3.88 10.91 22.19 0.24 -3.63 16 19 C -0.04 -0.73 12.09 66.97 0.81 0.08 16 20 O -0.19 -4.23 10.65 -2.51 -0.03 -4.25 16 21 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 22 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 23 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 24 H 0.41 14.17 8.34 -92.71 -0.77 13.39 16 25 H 0.42 8.10 8.49 -92.71 -0.79 7.31 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 31 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.23 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -77.96 288.63 1.28 -76.68 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.42 Total: 18.02 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 4.82 Total: 13.73 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -5.05 Total: -113.67 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.09 Total: -39.14 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -77.96 1.28 -76.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416032.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.854 kcal (2) G-P(sol) polarization free energy of solvation -77.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds