Wall clock time and date at job start Sun Mar 29 2020 22:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47345 * 2 1 4 4 C 1.50710 * 109.46829 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.37838 * 90.00198 * 4 3 2 6 6 C 1.36067 * 108.47551 * 179.73134 * 5 4 3 7 7 C 1.47416 * 126.44783 * 179.97438 * 6 5 4 8 8 O 1.21614 * 120.00363 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00042 * 359.97438 * 7 6 5 10 10 C 1.46505 * 120.00343 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47443 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99942 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00043 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00339 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00155 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46929 * 90.00108 * 15 13 11 17 17 H 1.48499 * 109.47251 * 210.00348 * 15 13 11 18 18 H 1.48497 * 109.46903 * 330.00483 * 15 13 11 19 19 C 1.36091 * 107.10305 * 359.97438 * 6 5 4 20 20 O 1.34047 * 125.37563 * 269.68701 * 4 3 2 21 21 H 1.09008 * 109.46664 * 59.99945 * 1 2 3 22 22 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47052 * 300.00652 * 1 2 3 24 24 H 1.09004 * 109.47546 * 239.99187 * 2 1 3 25 25 H 1.09003 * 109.46755 * 119.99573 * 2 1 3 26 26 H 1.08993 * 109.47401 * 59.99858 * 3 2 1 27 27 H 1.09003 * 109.46845 * 299.99518 * 3 2 1 28 28 H 0.97008 * 120.00120 * 359.97438 * 9 7 6 29 29 H 1.08994 * 109.46991 * 300.00117 * 10 9 7 30 30 H 1.08998 * 109.46828 * 59.99897 * 10 9 7 31 31 H 0.96999 * 120.00511 * 180.02562 * 14 13 11 32 32 H 1.07993 * 126.52411 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 7 4.2998 1.4421 -1.0585 6 6 5.6015 1.4481 -0.6623 7 6 6.7846 1.4495 -1.5418 8 8 7.9010 1.4546 -1.0593 9 7 6.6292 1.4441 -2.8805 10 6 7.8049 1.4449 -3.7546 11 6 7.3605 1.4375 -5.1945 12 1 6.3075 1.4330 -5.4346 13 6 8.2980 1.4374 -6.2053 14 7 9.5803 1.4433 -5.9130 15 14 7.7471 1.4289 -7.9903 16 1 7.5959 2.8267 -8.4682 17 1 8.7623 0.7296 -8.8183 18 1 6.4452 0.7236 -8.1031 19 6 5.6057 1.4526 0.6986 20 8 4.3227 1.4484 1.0939 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 1.8934 -0.5140 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 5.7387 1.4389 -3.2654 29 1 8.4000 2.3376 -3.5622 30 1 8.4061 0.5577 -3.5557 31 1 10.2399 1.4436 -6.6242 32 1 6.4755 1.4574 1.3386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427622636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:24 Heat of formation + Delta-G solvation = -37.230293 kcal Electronic energy + Delta-G solvation = -16059.445893 eV Core-core repulsion = 13214.088592 eV Total energy + Delta-G solvation = -2845.357301 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.32275 -38.60710 -35.64497 -34.56173 -34.19440 -32.25513 -30.67789 -27.60955 -27.06917 -24.11648 -22.50767 -22.08012 -20.93542 -19.83583 -18.07295 -16.70853 -16.57849 -15.75410 -15.26484 -15.22497 -14.84326 -14.25332 -14.18281 -13.68129 -13.54420 -12.79319 -12.46174 -12.07493 -11.94074 -11.92873 -11.66225 -11.09035 -11.01364 -10.96233 -10.84934 -10.69317 -10.31325 -9.43104 -9.35555 -8.90858 -8.71453 -7.87935 -6.14452 -4.20962 1.28641 2.20945 2.61614 3.27178 3.32890 3.36129 3.73988 3.88206 4.12251 4.39252 4.64359 4.66319 4.86335 5.04552 5.21860 5.22947 5.31212 5.40033 5.44919 5.61747 5.69729 5.78959 5.87188 5.96717 6.22532 7.28001 7.37469 7.50999 7.57864 7.73756 7.97898 8.62593 8.76781 9.04637 9.45138 10.95907 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.027498 B = 0.004958 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.022303 B = 5646.450469 C = 6554.879909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.021 4.021 4 C 0.187 3.813 5 N -0.455 5.455 6 C -0.056 4.056 7 C 0.580 3.420 8 O -0.554 6.554 9 N -0.689 5.689 10 C 0.247 3.753 11 C -0.542 4.542 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.887 5.887 15 Si 0.905 3.095 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.004 4.004 20 O -0.201 6.201 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.400 0.600 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.266 0.734 32 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.576 -0.980 12.702 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.059 4.059 4 C -0.022 4.022 5 N -0.185 5.185 6 C -0.176 4.176 7 C 0.363 3.637 8 O -0.433 6.433 9 N -0.335 5.335 10 C 0.127 3.873 11 C -0.581 4.581 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.524 5.524 15 Si 0.732 3.268 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.077 4.077 20 O -0.087 6.087 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.234 0.766 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -15.797 -0.978 12.290 20.039 hybrid contribution -0.168 0.022 -0.483 0.512 sum -15.965 -0.956 11.807 19.880 Atomic orbital electron populations 1.21752 0.94668 1.02246 1.02151 1.21556 0.96429 0.94809 1.03379 1.20180 0.80956 0.99508 1.05267 1.26285 0.96294 1.01024 0.78557 1.70797 1.01017 1.16890 1.29801 1.22234 0.92300 1.09823 0.93285 1.16849 0.85698 0.78374 0.82788 1.90778 1.24201 1.52788 1.75580 1.46354 1.12624 1.69804 1.04746 1.19214 0.82600 0.97997 0.87482 1.21229 0.93531 1.53114 0.90186 0.91741 1.24942 0.94691 0.94659 0.99676 1.69975 1.00188 1.49023 1.33235 0.86390 0.78454 0.78240 0.83703 1.20436 1.21001 1.19689 1.25245 0.84486 1.02061 0.95944 1.84339 1.16844 1.69659 1.37906 0.92195 0.92211 0.92493 0.90764 0.91471 0.88922 0.87454 0.76593 0.95171 0.95169 0.92445 0.75439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 3 C -0.02 -0.18 5.84 -27.88 -0.16 -0.34 16 4 C 0.19 2.44 7.56 -13.08 -0.10 2.34 16 5 N -0.45 -7.48 11.06 -7.65 -0.08 -7.56 16 6 C -0.06 -1.00 6.99 -83.02 -0.58 -1.58 16 7 C 0.58 12.81 7.81 -12.52 -0.10 12.71 16 8 O -0.55 -13.69 16.89 5.26 0.09 -13.60 16 9 N -0.69 -16.01 5.55 -62.56 -0.35 -16.36 16 10 C 0.25 6.80 5.43 -5.19 -0.03 6.77 16 11 C -0.54 -15.20 9.28 -34.44 -0.32 -15.52 16 12 H 0.06 1.71 7.60 -52.48 -0.40 1.32 16 13 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 15 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.00 -0.06 11.95 29.96 0.36 0.30 16 20 O -0.20 -2.63 10.73 6.52 0.07 -2.56 16 21 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 22 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.40 8.61 8.05 -40.82 -0.33 8.28 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.23 2.61 8.06 -52.49 -0.42 2.18 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -32.99 289.80 -5.10 -38.09 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.09 Total: 2.35 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -0.82 Total: 4.75 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.30 Total: -49.61 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.16 Total: -16.16 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.99 -5.10 -38.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427622636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.859 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds