Wall clock time and date at job start Sun Mar 29 2020 22:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47345 * 2 1 4 4 C 1.50710 * 109.46829 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.37838 * 90.00198 * 4 3 2 6 6 C 1.36067 * 108.47551 * 179.73134 * 5 4 3 7 7 C 1.47416 * 126.44783 * 179.97438 * 6 5 4 8 8 O 1.21614 * 120.00363 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00042 * 359.97438 * 7 6 5 10 10 C 1.46505 * 120.00343 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47443 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99942 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00043 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00339 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00155 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46929 * 90.00108 * 15 13 11 17 17 H 1.48499 * 109.47251 * 210.00348 * 15 13 11 18 18 H 1.48497 * 109.46903 * 330.00483 * 15 13 11 19 19 C 1.36091 * 107.10305 * 359.97438 * 6 5 4 20 20 O 1.34047 * 125.37563 * 269.68701 * 4 3 2 21 21 H 1.09008 * 109.46664 * 59.99945 * 1 2 3 22 22 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47052 * 300.00652 * 1 2 3 24 24 H 1.09004 * 109.47546 * 239.99187 * 2 1 3 25 25 H 1.09003 * 109.46755 * 119.99573 * 2 1 3 26 26 H 1.08993 * 109.47401 * 59.99858 * 3 2 1 27 27 H 1.09003 * 109.46845 * 299.99518 * 3 2 1 28 28 H 0.97008 * 120.00120 * 359.97438 * 9 7 6 29 29 H 1.08994 * 109.46991 * 300.00117 * 10 9 7 30 30 H 1.08998 * 109.46828 * 59.99897 * 10 9 7 31 31 H 0.96999 * 120.00511 * 180.02562 * 14 13 11 32 32 H 1.07993 * 126.52411 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 7 4.2998 1.4421 -1.0585 6 6 5.6015 1.4481 -0.6623 7 6 6.7846 1.4495 -1.5418 8 8 7.9010 1.4546 -1.0593 9 7 6.6292 1.4441 -2.8805 10 6 7.8049 1.4449 -3.7546 11 6 7.3605 1.4375 -5.1945 12 1 6.3075 1.4330 -5.4346 13 6 8.2980 1.4374 -6.2053 14 7 9.5803 1.4433 -5.9130 15 14 7.7471 1.4289 -7.9903 16 1 7.5959 2.8267 -8.4682 17 1 8.7623 0.7296 -8.8183 18 1 6.4452 0.7236 -8.1031 19 6 5.6057 1.4526 0.6986 20 8 4.3227 1.4484 1.0939 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 1.8934 -0.5140 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 5.7387 1.4389 -3.2654 29 1 8.4000 2.3376 -3.5622 30 1 8.4061 0.5577 -3.5557 31 1 10.2399 1.4436 -6.6242 32 1 6.4755 1.4574 1.3386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427622636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:23 Heat of formation + Delta-G solvation = -63.160775 kcal Electronic energy + Delta-G solvation = -16060.570323 eV Core-core repulsion = 13214.088592 eV Total energy + Delta-G solvation = -2846.481731 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.48339 -40.42999 -36.44252 -36.21896 -35.68716 -34.33883 -31.71772 -29.54577 -28.04329 -25.84044 -23.97254 -23.14734 -22.00816 -21.44950 -19.66222 -18.25011 -17.84075 -17.31810 -17.11878 -16.28289 -16.12406 -15.94619 -15.63563 -14.96271 -14.49672 -14.17589 -14.05169 -14.04255 -13.02136 -12.95980 -12.75617 -12.71852 -12.41988 -12.26542 -12.06902 -11.90010 -11.59900 -11.53579 -11.23853 -10.83702 -10.17605 -9.85918 -8.31719 -6.48655 0.05658 0.95335 1.41993 1.44881 1.54380 1.56678 2.22283 2.24088 2.42881 2.88149 3.02975 3.74717 3.78887 4.05269 4.11059 4.29549 4.50060 4.60672 4.72797 4.78505 4.94783 4.97619 5.08408 5.17489 5.27204 5.29610 5.38634 5.47506 5.58604 5.79113 6.40659 6.59232 6.78522 7.14397 7.29212 8.80588 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.027498 B = 0.004958 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.022303 B = 5646.450469 C = 6554.879909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.021 4.021 4 C 0.204 3.796 5 N -0.486 5.486 6 C -0.097 4.097 7 C 0.581 3.419 8 O -0.588 6.588 9 N -0.690 5.690 10 C 0.265 3.735 11 C -0.561 4.561 12 H 0.078 0.922 13 C 0.008 3.992 14 N -0.928 5.928 15 Si 0.987 3.013 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.259 1.259 19 C 0.030 3.970 20 O -0.190 6.190 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.409 0.591 29 H -0.004 1.004 30 H -0.004 1.004 31 H 0.271 0.729 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.230 -0.858 13.044 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.058 4.058 4 C -0.006 4.006 5 N -0.216 5.216 6 C -0.216 4.216 7 C 0.367 3.633 8 O -0.470 6.470 9 N -0.338 5.338 10 C 0.143 3.857 11 C -0.598 4.598 12 H 0.096 0.904 13 C -0.192 4.192 14 N -0.566 5.566 15 Si 0.809 3.191 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.182 1.182 19 C -0.045 4.045 20 O -0.076 6.076 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.142 0.858 27 H 0.134 0.866 28 H 0.244 0.756 29 H 0.014 0.986 30 H 0.014 0.986 31 H 0.080 0.920 32 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -18.490 -0.857 12.645 22.417 hybrid contribution 0.610 -0.023 -0.452 0.759 sum -17.880 -0.880 12.194 21.660 Atomic orbital electron populations 1.21727 0.92944 1.02704 1.03037 1.21526 0.97819 0.94042 1.02496 1.20528 0.77671 1.00398 1.07242 1.27214 0.97659 0.98095 0.77595 1.70735 1.00575 1.18821 1.31467 1.21637 0.91674 1.14391 0.93886 1.17334 0.86772 0.76628 0.82543 1.90740 1.26132 1.54071 1.76062 1.46114 1.11675 1.70800 1.05185 1.18696 0.83479 0.94767 0.88771 1.21563 0.94403 1.53507 0.90374 0.90375 1.26039 0.94527 0.93584 1.05081 1.70121 1.01716 1.49626 1.35175 0.85132 0.78428 0.78723 0.76794 1.19419 1.20498 1.18240 1.25692 0.85652 0.98312 0.94802 1.84411 1.16220 1.69267 1.37713 0.91918 0.92031 0.91004 0.92723 0.91374 0.85794 0.86582 0.75563 0.98596 0.98612 0.92038 0.72721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.12 -1.58 5.92 30.59 0.18 -1.40 16 3 C -0.02 -0.29 5.84 29.85 0.17 -0.11 16 4 C 0.20 4.86 7.56 88.39 0.67 5.53 16 5 N -0.49 -15.58 11.06 -293.03 -3.24 -18.82 16 6 C -0.10 -3.46 6.99 40.41 0.28 -3.18 16 7 C 0.58 26.50 7.81 86.66 0.68 27.18 16 8 O -0.59 -30.21 16.89 -4.08 -0.07 -30.28 16 9 N -0.69 -33.36 5.55 -470.11 -2.61 -35.97 16 10 C 0.26 15.32 5.43 85.63 0.46 15.78 16 11 C -0.56 -32.05 9.28 25.60 0.24 -31.81 16 12 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 13 C 0.01 0.43 5.46 84.65 0.46 0.90 16 14 N -0.93 -56.67 13.29 21.44 0.28 -56.39 16 15 Si 0.99 43.41 29.54 68.60 2.03 45.43 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 19 C 0.03 0.80 11.95 67.32 0.80 1.61 16 20 O -0.19 -4.45 10.73 0.42 0.00 -4.44 16 21 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 22 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 24 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.41 18.07 8.05 -92.70 -0.75 17.32 16 29 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.26 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -73.67 289.80 1.45 -72.22 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.38 Total: 14.36 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 4.67 Total: 13.89 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -5.56 Total: -111.18 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.06 Total: -34.72 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -73.67 1.45 -72.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427622636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.058 kcal (2) G-P(sol) polarization free energy of solvation -73.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds