Wall clock time and date at job start Sun Mar 29 2020 22:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47138 * 2 1 4 4 C 1.50700 * 109.47152 * 179.97438 * 3 2 1 5 5 C 1.35320 * 126.66312 * 90.26168 * 4 3 2 6 6 C 1.42274 * 103.91678 * 180.11044 * 5 4 3 7 7 C 1.48336 * 126.93448 * 179.91290 * 6 5 4 8 8 O 1.21494 * 119.99933 * 359.70492 * 7 6 5 9 9 N 1.34777 * 119.99811 * 179.71121 * 7 6 5 10 10 C 1.46496 * 119.99613 * 180.02562 * 9 7 6 11 11 C 1.50708 * 109.46996 * 179.97438 * 10 9 7 12 12 H 1.07995 * 119.99718 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99745 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99246 * 179.97438 * 13 11 10 15 15 Si 1.86789 * 120.00369 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47598 * 89.99942 * 15 13 11 17 17 H 1.48502 * 109.47214 * 210.00082 * 15 13 11 18 18 H 1.48500 * 109.47328 * 329.99726 * 15 13 11 19 19 N 1.30981 * 106.12641 * 359.64730 * 6 5 4 20 20 O 1.20910 * 111.43698 * 0.22425 * 19 6 5 21 21 H 1.09007 * 109.46799 * 60.00321 * 1 2 3 22 22 H 1.08998 * 109.47452 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47293 * 300.00338 * 1 2 3 24 24 H 1.08998 * 109.47386 * 240.00143 * 2 1 3 25 25 H 1.08997 * 109.47176 * 120.00060 * 2 1 3 26 26 H 1.08998 * 109.46865 * 59.99824 * 3 2 1 27 27 H 1.08997 * 109.47136 * 300.00084 * 3 2 1 28 28 H 1.08002 * 128.04189 * 0.02562 * 5 4 3 29 29 H 0.96996 * 119.99871 * 359.97438 * 9 7 6 30 30 H 1.09002 * 109.47226 * 299.99334 * 10 9 7 31 31 H 1.08999 * 109.47406 * 59.99933 * 10 9 7 32 32 H 0.97003 * 119.99249 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3555 1.4473 -1.0845 6 6 5.6673 1.4423 -0.5339 7 6 6.9481 1.4426 -1.2821 8 8 6.9418 1.4423 -2.4971 9 7 8.1187 1.4433 -0.6143 10 6 9.3836 1.4442 -1.3533 11 6 10.5342 1.4454 -0.3799 12 1 10.3423 1.4458 0.6829 13 6 11.8317 1.4459 -0.8462 14 7 12.8356 1.4474 0.0033 15 14 12.1635 1.4458 -2.6844 16 1 12.2509 2.8458 -3.1718 17 1 13.4450 0.7463 -2.9561 18 1 11.0586 0.7452 -3.3869 19 7 5.5158 1.4430 0.7672 20 8 4.3468 1.4432 1.0759 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 4.0710 1.4523 -2.1264 29 1 8.1237 1.4438 0.3557 30 1 9.4387 0.5543 -1.9804 31 1 9.4376 2.3343 -1.9801 32 1 13.7485 1.4474 -0.3248 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451238495.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:33 Heat of formation + Delta-G solvation = -16.508856 kcal Electronic energy + Delta-G solvation = -16031.419479 eV Core-core repulsion = 13186.960727 eV Total energy + Delta-G solvation = -2844.458752 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.21001 -40.66211 -36.63501 -36.34572 -35.08571 -34.44123 -32.64642 -30.22520 -27.92363 -26.16445 -24.07290 -23.53985 -22.50575 -21.29873 -19.22070 -18.88839 -18.54316 -17.73516 -17.12402 -16.35644 -16.20459 -15.97225 -15.41852 -14.86925 -14.59093 -14.42431 -14.31263 -14.11361 -13.33388 -13.15116 -12.74641 -12.52093 -12.43712 -12.14063 -11.95887 -11.75873 -11.59856 -11.50584 -11.45561 -10.97368 -10.45401 -10.18047 -8.44677 -6.54205 0.01861 0.63832 1.32238 1.33170 1.46421 1.88036 2.00744 2.10415 2.25251 2.89189 2.90097 3.49010 3.87887 4.06721 4.13449 4.16571 4.30196 4.61225 4.68559 4.81778 4.84564 4.90438 4.95176 5.01355 5.13328 5.23865 5.31841 5.35228 5.52043 5.97166 6.40549 6.53993 6.89794 7.03591 7.13895 8.70442 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.061519 B = 0.004250 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.034414 B = 6585.999569 C = 6892.675743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.034 4.034 4 C -0.013 4.013 5 C -0.188 4.188 6 C -0.048 4.048 7 C 0.583 3.417 8 O -0.567 6.567 9 N -0.691 5.691 10 C 0.231 3.769 11 C -0.556 4.556 12 H 0.053 0.947 13 C 0.027 3.973 14 N -0.930 5.930 15 Si 0.944 3.056 16 H -0.261 1.261 17 H -0.270 1.270 18 H -0.256 1.256 19 N -0.351 5.351 20 O 0.133 5.867 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.111 0.889 27 H 0.122 0.878 28 H 0.195 0.805 29 H 0.408 0.592 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.687 -0.792 -0.651 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.072 4.072 4 C -0.076 4.076 5 C -0.211 4.211 6 C -0.205 4.205 7 C 0.368 3.632 8 O -0.446 6.446 9 N -0.340 5.340 10 C 0.108 3.892 11 C -0.593 4.593 12 H 0.071 0.929 13 C -0.174 4.174 14 N -0.568 5.568 15 Si 0.766 3.234 16 H -0.186 1.186 17 H -0.195 1.195 18 H -0.180 1.180 19 N -0.049 5.049 20 O 0.054 5.946 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.140 0.860 28 H 0.212 0.788 29 H 0.243 0.757 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.495 -0.793 -0.500 24.513 hybrid contribution 0.693 -0.037 -0.753 1.024 sum -23.801 -0.830 -1.253 23.849 Atomic orbital electron populations 1.21744 0.93548 1.02448 1.02921 1.21568 0.97371 0.94598 1.02674 1.20537 0.79793 0.99683 1.07157 1.25189 0.97567 1.00942 0.83948 1.22655 0.88307 1.07276 1.02869 1.23435 0.96790 1.09598 0.90653 1.17353 0.82502 0.76944 0.86385 1.90710 1.87480 1.52655 1.13751 1.46027 1.05555 1.71148 1.11229 1.19287 0.80668 0.96626 0.92589 1.21230 0.90664 1.53678 0.93774 0.92924 1.25667 0.95358 0.93150 1.03235 1.69995 0.99848 1.50099 1.36899 0.85766 0.78645 0.79732 0.79238 1.18619 1.19512 1.18037 1.74219 0.98350 1.16785 1.15586 1.84748 1.10608 1.65023 1.34197 0.91598 0.92379 0.91594 0.91870 0.91965 0.87047 0.85970 0.78787 0.75683 0.95814 0.95912 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 71.98 0.71 -0.26 16 2 C -0.12 -1.19 5.92 30.59 0.18 -1.01 16 3 C -0.03 -0.32 5.78 29.85 0.17 -0.15 16 4 C -0.01 -0.25 6.73 25.01 0.17 -0.09 16 5 C -0.19 -4.74 10.92 22.60 0.25 -4.49 16 6 C -0.05 -1.63 7.19 42.96 0.31 -1.32 16 7 C 0.58 24.83 7.85 86.93 0.68 25.51 16 8 O -0.57 -26.64 16.95 -3.70 -0.06 -26.70 16 9 N -0.69 -31.42 5.55 -469.23 -2.60 -34.03 16 10 C 0.23 11.86 4.50 85.64 0.38 12.25 16 11 C -0.56 -32.10 9.83 25.60 0.25 -31.85 16 12 H 0.05 3.25 7.84 -2.91 -0.02 3.23 16 13 C 0.03 1.53 5.47 84.65 0.46 2.00 16 14 N -0.93 -56.72 13.96 21.45 0.30 -56.42 16 15 Si 0.94 44.30 27.47 68.60 1.88 46.18 16 16 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.26 -11.79 6.54 99.48 0.65 -11.14 16 19 N -0.35 -11.36 11.84 -49.51 -0.59 -11.94 16 20 O 0.13 3.35 11.18 71.95 0.80 4.15 16 21 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 22 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 23 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 29 H 0.41 17.71 8.08 -92.71 -0.75 16.96 16 30 H 0.02 1.25 7.20 -2.39 -0.02 1.24 16 31 H 0.02 1.19 7.57 -2.39 -0.02 1.17 16 32 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -70.33 285.84 3.64 -66.70 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.33 Total: 11.47 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 3.57 Total: 0.60 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -2.89 Total: -102.39 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.74 Total: -22.55 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -70.33 3.64 -66.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451238495.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.188 kcal (2) G-P(sol) polarization free energy of solvation -70.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds