Wall clock time and date at job start Sun Mar 29 2020 21:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.85290 * 300.70082 * 12 10 9 14 14 C 1.54626 * 110.96959 * 64.49086 * 12 10 9 15 15 C 1.51375 * 104.14576 * 93.33532 * 14 12 10 16 16 O 1.21283 * 124.93551 * 196.29329 * 15 14 12 17 17 N 1.34425 * 110.12965 * 16.25442 * 15 14 12 18 18 C 1.46488 * 124.35213 * 180.42570 * 17 15 14 19 19 C 1.53004 * 117.50251 * 8.59663 * 18 17 15 20 20 C 1.53001 * 59.99979 * 252.50968 * 19 18 17 21 21 C 1.46768 * 111.29582 * 0.40272 * 17 15 14 22 22 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 24 24 H 1.09002 * 110.48282 * 211.99701 * 14 12 10 25 25 H 1.08998 * 110.48733 * 334.64290 * 14 12 10 26 26 H 1.09007 * 115.55087 * 154.30935 * 18 17 15 27 27 H 1.08997 * 117.49769 * 0.02562 * 19 18 17 28 28 H 1.08998 * 117.50036 * 145.02307 * 19 18 17 29 29 H 1.09000 * 117.50288 * 252.50719 * 20 19 18 30 30 H 1.09001 * 117.51669 * 107.47890 * 20 19 18 31 31 H 1.08992 * 110.24596 * 223.98243 * 21 17 15 32 32 H 1.09006 * 110.31686 * 102.02021 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 1 0.5992 -4.9438 0.8548 14 6 0.4292 -5.0241 -1.3247 15 6 1.3513 -5.7962 -2.2439 16 8 1.2149 -5.8905 -3.4453 17 7 2.3439 -6.3615 -1.5352 18 6 3.4166 -7.1723 -2.1164 19 6 3.5182 -7.2207 -3.6423 20 6 3.0138 -8.4414 -2.8700 21 6 2.2150 -6.0614 -0.1043 22 1 -0.4849 0.8400 0.0004 23 1 0.3535 -2.3907 -0.0068 24 1 -0.4836 -5.5895 -1.1369 25 1 0.1941 -4.0487 -1.7506 26 1 4.3468 -7.1980 -1.5486 27 1 2.7871 -6.6488 -4.2137 28 1 4.5153 -7.2780 -4.0787 29 1 3.6791 -9.3019 -2.7985 30 1 1.9506 -8.6732 -2.9331 31 1 3.1848 -5.7911 0.3132 32 1 1.8021 -6.9193 0.4266 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522205328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:47 Heat of formation + Delta-G solvation = -39.755930 kcal Electronic energy + Delta-G solvation = -17026.111846 eV Core-core repulsion = 14180.645025 eV Total energy + Delta-G solvation = -2845.466821 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55329 -38.22250 -36.42536 -35.57831 -33.98997 -31.54890 -30.51012 -27.36450 -25.32721 -22.92687 -22.53612 -22.08706 -19.15428 -18.90704 -17.99764 -16.93638 -16.47016 -15.32651 -15.09247 -14.57726 -14.32904 -14.07845 -13.73266 -13.49441 -13.05917 -12.86441 -12.66887 -11.83603 -11.60058 -11.50259 -11.30570 -11.16225 -11.09342 -10.84778 -10.38291 -10.33366 -10.27039 -9.60127 -9.24378 -8.50826 -8.28738 -8.05501 -6.48969 -3.90066 2.78749 3.10958 3.12490 3.24282 3.31135 3.73208 3.97687 4.10595 4.58221 4.61705 4.78478 4.93373 5.04060 5.08574 5.25507 5.29019 5.60176 5.63892 5.67332 5.73163 5.86260 6.05212 6.08429 6.15629 6.30647 6.38066 6.89285 7.34650 7.49189 7.97032 8.42961 8.50431 9.09366 9.44169 9.93912 10.68325 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.040632 B = 0.005926 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.944106 B = 4723.721777 C = 4772.355141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.554 5.554 10 C 0.443 3.557 11 O -0.589 6.589 12 C -0.116 4.116 13 H 0.111 0.889 14 C -0.147 4.147 15 C 0.523 3.477 16 O -0.537 6.537 17 N -0.584 5.584 18 C 0.087 3.913 19 C -0.192 4.192 20 C -0.194 4.194 21 C 0.122 3.878 22 H 0.273 0.727 23 H 0.394 0.606 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.731 -12.351 -0.086 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.432 4.432 8 H 0.122 0.878 9 N -0.189 5.189 10 C 0.228 3.772 11 O -0.474 6.474 12 C -0.138 4.138 13 H 0.129 0.871 14 C -0.187 4.187 15 C 0.312 3.688 16 O -0.415 6.415 17 N -0.315 5.315 18 C -0.017 4.017 19 C -0.229 4.229 20 C -0.233 4.233 21 C -0.001 4.001 22 H 0.083 0.917 23 H 0.227 0.773 24 H 0.125 0.875 25 H 0.128 0.872 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.391 -12.245 -0.717 12.344 hybrid contribution -0.225 0.870 0.128 0.908 sum 1.166 -11.375 -0.589 11.449 Atomic orbital electron populations 1.69610 1.05967 1.28296 1.49928 1.25288 0.95645 0.99831 0.96967 0.85789 0.79725 0.80994 0.77791 1.19188 1.20646 1.20654 1.19774 0.93441 0.82133 1.47837 0.87786 1.41836 1.09287 1.04550 1.63188 1.19468 0.88063 0.84552 0.85094 1.90522 1.13695 1.86850 1.56380 1.22207 0.97464 0.95187 0.98936 0.87061 1.22421 0.98342 1.02981 0.95000 1.20927 0.81667 0.78472 0.87722 1.90559 1.74617 1.62532 1.13775 1.47516 1.25360 1.50178 1.08478 1.21445 0.91323 0.95009 0.93898 1.23718 1.03845 1.01400 0.93952 1.23337 1.02074 0.92327 1.05513 1.21973 1.01992 0.95599 0.80491 0.91744 0.77272 0.87485 0.87248 0.85445 0.85120 0.88742 0.88492 0.88963 0.88381 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.88 13.05 55.50 0.72 -23.15 16 2 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 3 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.52 5.10 -10.96 -0.06 -13.58 16 10 C 0.44 9.94 7.07 -10.98 -0.08 9.86 16 11 O -0.59 -15.32 15.09 5.55 0.08 -15.23 16 12 C -0.12 -1.86 3.54 -90.14 -0.32 -2.18 16 13 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 14 C -0.15 -2.30 6.40 -26.70 -0.17 -2.47 16 15 C 0.52 9.42 7.88 -10.81 -0.09 9.33 16 16 O -0.54 -10.97 14.69 5.55 0.08 -10.89 16 17 N -0.58 -9.41 3.27 -164.80 -0.54 -9.95 16 18 C 0.09 1.24 6.88 -67.93 -0.47 0.77 16 19 C -0.19 -2.74 9.77 -26.73 -0.26 -3.01 16 20 C -0.19 -2.38 10.34 -26.73 -0.28 -2.66 16 21 C 0.12 1.78 6.70 -3.12 -0.02 1.76 16 22 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.39 9.14 7.90 -40.82 -0.32 8.81 16 24 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.11 1.91 7.75 -51.93 -0.40 1.51 16 26 H 0.13 1.58 8.14 -51.92 -0.42 1.16 16 27 H 0.13 2.28 5.30 -51.93 -0.28 2.00 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.58 6.98 -51.93 -0.36 1.22 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 276.23 15.07 4.16 4.16 Total: -1.00 -31.98 276.23 -6.32 -38.30 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -3.83 Total: 11.04 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -1.92 Total: 3.58 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.13 Total: -46.68 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: 0.17 Total: -26.12 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.98 -6.32 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522205328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.456 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds