Wall clock time and date at job start Sun Mar 29 2020 21:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.85290 * 300.70082 * 12 10 9 14 14 C 1.54626 * 110.96959 * 64.49086 * 12 10 9 15 15 C 1.51375 * 104.14576 * 93.33532 * 14 12 10 16 16 O 1.21283 * 124.93551 * 196.29329 * 15 14 12 17 17 N 1.34425 * 110.12965 * 16.25442 * 15 14 12 18 18 C 1.46488 * 124.35213 * 180.42570 * 17 15 14 19 19 C 1.53004 * 117.50251 * 8.59663 * 18 17 15 20 20 C 1.53001 * 59.99979 * 252.50968 * 19 18 17 21 21 C 1.46768 * 111.29582 * 0.40272 * 17 15 14 22 22 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 24 24 H 1.09002 * 110.48282 * 211.99701 * 14 12 10 25 25 H 1.08998 * 110.48733 * 334.64290 * 14 12 10 26 26 H 1.09007 * 115.55087 * 154.30935 * 18 17 15 27 27 H 1.08997 * 117.49769 * 0.02562 * 19 18 17 28 28 H 1.08998 * 117.50036 * 145.02307 * 19 18 17 29 29 H 1.09000 * 117.50288 * 252.50719 * 20 19 18 30 30 H 1.09001 * 117.51669 * 107.47890 * 20 19 18 31 31 H 1.08992 * 110.24596 * 223.98243 * 21 17 15 32 32 H 1.09006 * 110.31686 * 102.02021 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 1 0.5992 -4.9438 0.8548 14 6 0.4292 -5.0241 -1.3247 15 6 1.3513 -5.7962 -2.2439 16 8 1.2149 -5.8905 -3.4453 17 7 2.3439 -6.3615 -1.5352 18 6 3.4166 -7.1723 -2.1164 19 6 3.5182 -7.2207 -3.6423 20 6 3.0138 -8.4414 -2.8700 21 6 2.2150 -6.0614 -0.1043 22 1 -0.4849 0.8400 0.0004 23 1 0.3535 -2.3907 -0.0068 24 1 -0.4836 -5.5895 -1.1369 25 1 0.1941 -4.0487 -1.7506 26 1 4.3468 -7.1980 -1.5486 27 1 2.7871 -6.6488 -4.2137 28 1 4.5153 -7.2780 -4.0787 29 1 3.6791 -9.3019 -2.7985 30 1 1.9506 -8.6732 -2.9331 31 1 3.1848 -5.7911 0.3132 32 1 1.8021 -6.9193 0.4266 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522205328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:46 Heat of formation + Delta-G solvation = -62.339122 kcal Electronic energy + Delta-G solvation = -17027.091126 eV Core-core repulsion = 14180.645025 eV Total energy + Delta-G solvation = -2846.446101 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.89211 -39.93524 -37.65146 -36.97510 -35.93902 -33.40585 -31.92994 -28.66031 -27.21119 -24.27125 -23.79733 -23.21897 -20.83259 -20.20317 -19.91978 -18.31605 -17.86758 -16.94008 -16.45840 -16.24843 -15.81164 -15.62298 -15.38056 -14.75699 -14.63893 -14.16027 -14.03451 -13.52297 -13.19527 -12.91909 -12.78048 -12.51133 -12.43491 -12.33802 -12.13203 -11.96041 -11.53615 -11.37780 -10.59175 -10.36063 -10.03555 -9.48790 -8.49161 -5.97666 1.34778 1.41337 1.44923 1.54719 1.94709 1.98699 2.28060 2.89584 3.08179 3.14795 3.34553 3.49274 3.82959 3.91672 4.01059 4.12257 4.27001 4.52337 4.60088 4.63603 4.75212 4.78086 4.89852 4.96148 5.01058 5.27475 5.39981 5.69983 5.96953 6.09437 6.55529 7.09529 7.10983 7.52785 8.07105 8.68037 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.040632 B = 0.005926 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.944106 B = 4723.721777 C = 4772.355141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.990 3.010 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.629 6.629 12 C -0.105 4.105 13 H 0.156 0.844 14 C -0.139 4.139 15 C 0.506 3.494 16 O -0.573 6.573 17 N -0.586 5.586 18 C 0.067 3.933 19 C -0.211 4.211 20 C -0.163 4.163 21 C 0.124 3.876 22 H 0.278 0.722 23 H 0.398 0.602 24 H 0.152 0.848 25 H 0.086 0.914 26 H 0.146 0.854 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 -13.670 0.910 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.517 6.517 12 C -0.127 4.127 13 H 0.173 0.827 14 C -0.179 4.179 15 C 0.295 3.705 16 O -0.454 6.454 17 N -0.316 5.316 18 C -0.036 4.036 19 C -0.248 4.248 20 C -0.201 4.201 21 C 0.002 3.998 22 H 0.088 0.912 23 H 0.233 0.767 24 H 0.169 0.831 25 H 0.105 0.895 26 H 0.163 0.837 27 H 0.114 0.886 28 H 0.131 0.869 29 H 0.149 0.851 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.003 -13.583 0.304 13.623 hybrid contribution -0.060 1.227 -0.197 1.244 sum 0.943 -12.356 0.107 12.393 Atomic orbital electron populations 1.69659 1.06737 1.29332 1.49918 1.26003 0.96517 1.02327 0.96130 0.84913 0.78042 0.77304 0.78353 1.19911 1.19911 1.19266 1.19690 0.92667 0.84084 1.50058 0.90424 1.41895 1.09440 1.04624 1.64123 1.20625 0.87985 0.86146 0.82394 1.90496 1.15903 1.87887 1.57404 1.22231 0.97802 0.91712 1.00957 0.82685 1.22432 0.99570 1.02165 0.93757 1.21396 0.82585 0.78820 0.87653 1.90552 1.75686 1.63951 1.15237 1.47714 1.25087 1.49719 1.09093 1.21818 0.91827 0.96171 0.93813 1.23660 1.04133 1.03028 0.94025 1.23349 1.02138 0.92224 1.02433 1.22151 1.01104 0.96590 0.79931 0.91203 0.76720 0.83058 0.89522 0.83651 0.88580 0.86878 0.85103 0.89912 0.90013 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.57 13.05 21.67 0.28 -48.29 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 0.99 42.64 29.55 68.60 2.03 44.66 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.34 -18.75 9.68 84.04 0.81 -17.93 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -27.94 5.10 -306.97 -1.57 -29.51 16 10 C 0.44 19.77 7.07 87.66 0.62 20.39 16 11 O -0.63 -33.32 15.09 -3.07 -0.05 -33.37 16 12 C -0.11 -3.14 3.54 -10.48 -0.04 -3.18 16 13 H 0.16 3.34 8.14 -2.39 -0.02 3.32 16 14 C -0.14 -4.11 6.40 30.62 0.20 -3.91 16 15 C 0.51 17.88 7.88 87.93 0.69 18.57 16 16 O -0.57 -23.87 14.69 -3.04 -0.04 -23.92 16 17 N -0.59 -17.95 3.27 -793.90 -2.60 -20.55 16 18 C 0.07 1.79 6.88 45.00 0.31 2.10 16 19 C -0.21 -5.92 9.77 30.60 0.30 -5.62 16 20 C -0.16 -3.63 10.34 30.60 0.32 -3.31 16 21 C 0.12 3.28 6.70 86.83 0.58 3.86 16 22 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 23 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 24 H 0.15 3.11 8.14 -2.39 -0.02 3.09 16 25 H 0.09 3.01 7.75 -2.39 -0.02 2.99 16 26 H 0.15 3.30 8.14 -2.38 -0.02 3.28 16 27 H 0.10 3.46 5.30 -2.39 -0.01 3.45 16 28 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.49 6.98 -2.39 -0.02 2.47 16 32 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -72.15 276.23 2.73 -69.42 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.41 Total: 30.61 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 4.26 Total: 10.94 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -3.88 Total: -98.35 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -0.09 Total: -57.29 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -72.15 2.73 -69.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522205328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.078 kcal (2) G-P(sol) polarization free energy of solvation -72.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds