Wall clock time and date at job start Sun Mar 29 2020 22:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47077 * 2 1 4 4 C 1.50700 * 109.47164 * 120.00517 * 2 1 3 5 5 N 1.30010 * 127.32947 * 300.02085 * 4 2 1 6 6 O 1.20653 * 112.31730 * 179.97438 * 5 4 2 7 7 C 1.33509 * 113.16541 * 359.97438 * 6 5 4 8 8 C 1.37429 * 106.32425 * 0.02562 * 7 6 5 9 9 C 1.47325 * 128.57156 * 179.97438 * 8 7 6 10 10 O 1.21631 * 120.00290 * 170.66295 * 9 8 7 11 11 N 1.34779 * 119.99583 * 350.66784 * 9 8 7 12 12 C 1.46490 * 120.00302 * 0.50357 * 11 9 8 13 13 C 1.36967 * 119.99431 * 180.50682 * 11 9 8 14 14 H 1.08000 * 120.00439 * 24.25351 * 13 11 9 15 15 C 1.38983 * 119.99869 * 204.25002 * 13 11 9 16 16 N 1.31412 * 120.00005 * 22.42409 * 15 13 11 17 17 Si 1.86807 * 120.00085 * 202.42726 * 15 13 11 18 18 H 1.48493 * 109.47135 * 94.98918 * 17 15 13 19 19 H 1.48497 * 109.47007 * 214.98991 * 17 15 13 20 20 H 1.48503 * 109.46791 * 334.98853 * 17 15 13 21 21 H 1.09004 * 109.47147 * 300.00277 * 1 2 3 22 22 H 1.09003 * 109.47158 * 59.99395 * 1 2 3 23 23 H 1.08997 * 109.47344 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46543 * 240.00030 * 2 1 3 25 25 H 1.09003 * 109.46466 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47071 * 299.99793 * 3 2 1 27 27 H 1.08998 * 109.47410 * 60.00561 * 3 2 1 28 28 H 1.08005 * 126.84080 * 179.97438 * 7 6 5 29 29 H 1.09007 * 109.47472 * 83.73340 * 12 11 9 30 30 H 1.09006 * 109.47378 * 203.73054 * 12 11 9 31 31 H 1.08998 * 109.47560 * 323.73429 * 12 11 9 32 32 H 0.97001 * 119.99745 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8075 -0.3933 2.4710 6 8 2.3430 -1.1513 3.2420 7 6 3.0287 -2.1218 2.6335 8 6 2.8807 -1.9113 1.2835 9 6 3.4350 -2.6945 0.1655 10 8 3.0693 -2.4722 -0.9730 11 7 4.3473 -3.6574 0.4044 12 6 4.7795 -3.9327 1.7768 13 6 4.8703 -4.3784 -0.6360 14 1 4.8802 -3.9603 -1.6318 15 6 5.3884 -5.6482 -0.4104 16 7 5.0051 -6.3369 0.6411 17 14 6.6296 -6.3759 -1.6018 18 1 8.0045 -6.1131 -1.1061 19 1 6.4134 -7.8411 -1.7083 20 1 6.4576 -5.7517 -2.9383 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.5889 -2.9142 3.1077 29 1 4.0679 -4.6070 2.2535 30 1 5.7655 -4.3972 1.7610 31 1 4.8267 -2.9990 2.3372 32 1 5.3670 -7.2230 0.7988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528315539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:53 Heat of formation + Delta-G solvation = 34.455164 kcal Electronic energy + Delta-G solvation = -17219.061006 eV Core-core repulsion = 14376.812220 eV Total energy + Delta-G solvation = -2842.248786 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.32166 -38.46534 -35.97155 -34.71685 -32.57638 -31.46553 -30.91987 -26.95351 -26.64480 -25.47221 -23.36502 -22.88069 -19.83783 -19.44243 -17.32971 -17.13039 -16.58265 -15.87383 -14.99436 -14.53769 -14.25525 -13.96212 -13.94036 -13.25482 -13.04749 -12.53297 -12.04239 -11.95939 -11.64653 -11.46373 -11.29016 -11.07425 -10.99059 -10.82749 -10.51338 -10.42362 -10.33028 -9.42272 -9.18857 -9.01436 -8.61676 -7.83745 -6.55272 -4.00523 1.74817 2.34285 3.10383 3.18074 3.23279 3.56856 4.02538 4.19610 4.44821 4.70030 4.90151 4.98189 5.32975 5.39005 5.52472 5.59447 5.69247 5.80001 5.91730 5.97890 5.99446 6.13429 6.20446 6.39236 6.43533 6.50606 6.73760 6.82797 7.41947 7.98994 8.31525 8.72047 9.02219 9.21686 9.83179 10.50993 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.007053 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.405758 B = 3968.981353 C = 4479.829379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C -0.139 4.139 4 C 0.062 3.938 5 N -0.368 5.368 6 O 0.080 5.920 7 C -0.063 4.063 8 C -0.210 4.210 9 C 0.509 3.491 10 O -0.580 6.580 11 N -0.425 5.425 12 C 0.085 3.915 13 C -0.309 4.309 14 H 0.104 0.896 15 C 0.036 3.964 16 N -0.864 5.864 17 Si 0.924 3.076 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.266 1.266 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.115 0.885 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.237 0.763 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 6.958 4.141 8.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.043 4.043 3 C -0.197 4.197 4 C -0.101 4.101 5 N -0.076 5.076 6 O 0.020 5.980 7 C -0.144 4.144 8 C -0.218 4.218 9 C 0.298 3.702 10 O -0.466 6.466 11 N -0.142 5.142 12 C -0.059 4.059 13 C -0.437 4.437 14 H 0.122 0.878 15 C -0.170 4.170 16 N -0.501 5.501 17 Si 0.750 3.250 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.190 1.190 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.133 0.867 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.252 0.748 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.738 7.793 4.290 9.308 hybrid contribution 1.063 -1.281 -0.761 1.830 sum -1.675 6.511 3.530 7.594 Atomic orbital electron populations 1.21775 0.94056 1.02124 1.01683 1.19728 0.95739 0.95219 0.93607 1.21791 1.01268 0.94874 1.01770 1.24699 0.97552 0.94404 0.93403 1.73459 1.17277 1.14766 1.02051 1.84478 1.49179 1.30312 1.34051 1.27476 0.98429 0.95509 0.92989 1.22803 1.05050 0.99314 0.94607 1.16719 0.82104 0.84621 0.86766 1.90584 1.62592 1.71298 1.22109 1.43412 1.33635 1.30174 1.06945 1.22051 1.02328 0.97660 0.83868 1.19696 1.35817 0.97314 0.90874 0.87810 1.25384 0.98421 0.95330 0.97873 1.70040 1.39345 1.11537 1.29161 0.85934 0.80304 0.77994 0.80720 1.20176 1.20819 1.19041 0.92681 0.92001 0.92482 0.86736 0.92617 0.91980 0.92623 0.74776 0.92164 0.90462 0.93737 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.18 37.16 0.34 -1.70 16 2 C -0.02 -0.41 3.33 -91.77 -0.31 -0.71 16 3 C -0.14 -2.00 9.18 37.16 0.34 -1.66 16 4 C 0.06 1.19 6.09 -79.76 -0.49 0.71 16 5 N -0.37 -6.70 12.01 34.79 0.42 -6.29 16 6 O 0.08 1.36 11.06 18.61 0.21 1.57 16 7 C -0.06 -1.07 10.28 30.44 0.31 -0.76 16 8 C -0.21 -4.36 6.27 -102.89 -0.64 -5.01 16 9 C 0.51 12.65 7.62 -12.56 -0.10 12.55 16 10 O -0.58 -16.04 15.03 5.25 0.08 -15.96 16 11 N -0.42 -10.60 3.00 -123.46 -0.37 -10.97 16 12 C 0.08 1.73 7.17 59.84 0.43 2.16 16 13 C -0.31 -8.34 9.17 -14.98 -0.14 -8.48 16 14 H 0.10 2.93 7.51 -52.49 -0.39 2.54 16 15 C 0.04 0.90 4.78 -17.46 -0.08 0.82 16 16 N -0.86 -22.01 11.48 55.50 0.64 -21.37 16 17 Si 0.92 19.73 29.61 -169.99 -5.03 14.69 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.11 2.24 6.35 -51.93 -0.33 1.91 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.24 3.28 4.81 -52.48 -0.25 3.03 16 29 H 0.06 1.23 7.58 -51.93 -0.39 0.83 16 30 H 0.08 1.65 6.93 -51.93 -0.36 1.29 16 31 H 0.04 0.75 4.84 -51.93 -0.25 0.50 16 32 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 271.74 15.07 4.10 4.10 Total: -1.00 -30.11 271.74 -3.95 -34.06 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -3.65 Total: 2.25 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.33 Total: -2.08 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.68 Total: -38.62 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.28 Total: -14.39 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.11 -3.95 -34.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528315539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.512 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds