Wall clock time and date at job start Sun Mar 29 2020 22:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47077 * 2 1 4 4 C 1.50700 * 109.47164 * 120.00517 * 2 1 3 5 5 N 1.30010 * 127.32947 * 300.02085 * 4 2 1 6 6 O 1.20653 * 112.31730 * 179.97438 * 5 4 2 7 7 C 1.33509 * 113.16541 * 359.97438 * 6 5 4 8 8 C 1.37429 * 106.32425 * 0.02562 * 7 6 5 9 9 C 1.47325 * 128.57156 * 179.97438 * 8 7 6 10 10 O 1.21631 * 120.00290 * 170.66295 * 9 8 7 11 11 N 1.34779 * 119.99583 * 350.66784 * 9 8 7 12 12 C 1.46490 * 120.00302 * 0.50357 * 11 9 8 13 13 C 1.36967 * 119.99431 * 180.50682 * 11 9 8 14 14 H 1.08000 * 120.00439 * 24.25351 * 13 11 9 15 15 C 1.38983 * 119.99869 * 204.25002 * 13 11 9 16 16 N 1.31412 * 120.00005 * 22.42409 * 15 13 11 17 17 Si 1.86807 * 120.00085 * 202.42726 * 15 13 11 18 18 H 1.48493 * 109.47135 * 94.98918 * 17 15 13 19 19 H 1.48497 * 109.47007 * 214.98991 * 17 15 13 20 20 H 1.48503 * 109.46791 * 334.98853 * 17 15 13 21 21 H 1.09004 * 109.47147 * 300.00277 * 1 2 3 22 22 H 1.09003 * 109.47158 * 59.99395 * 1 2 3 23 23 H 1.08997 * 109.47344 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46543 * 240.00030 * 2 1 3 25 25 H 1.09003 * 109.46466 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47071 * 299.99793 * 3 2 1 27 27 H 1.08998 * 109.47410 * 60.00561 * 3 2 1 28 28 H 1.08005 * 126.84080 * 179.97438 * 7 6 5 29 29 H 1.09007 * 109.47472 * 83.73340 * 12 11 9 30 30 H 1.09006 * 109.47378 * 203.73054 * 12 11 9 31 31 H 1.08998 * 109.47560 * 323.73429 * 12 11 9 32 32 H 0.97001 * 119.99745 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8075 -0.3933 2.4710 6 8 2.3430 -1.1513 3.2420 7 6 3.0287 -2.1218 2.6335 8 6 2.8807 -1.9113 1.2835 9 6 3.4350 -2.6945 0.1655 10 8 3.0693 -2.4722 -0.9730 11 7 4.3473 -3.6574 0.4044 12 6 4.7795 -3.9327 1.7768 13 6 4.8703 -4.3784 -0.6360 14 1 4.8802 -3.9603 -1.6318 15 6 5.3884 -5.6482 -0.4104 16 7 5.0051 -6.3369 0.6411 17 14 6.6296 -6.3759 -1.6018 18 1 8.0045 -6.1131 -1.1061 19 1 6.4134 -7.8411 -1.7083 20 1 6.4576 -5.7517 -2.9383 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.5889 -2.9142 3.1077 29 1 4.0679 -4.6070 2.2535 30 1 5.7655 -4.3972 1.7610 31 1 4.8267 -2.9990 2.3372 32 1 5.3670 -7.2230 0.7988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528315539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:52 Heat of formation + Delta-G solvation = 15.455556 kcal Electronic energy + Delta-G solvation = -17219.884891 eV Core-core repulsion = 14376.812220 eV Total energy + Delta-G solvation = -2843.072671 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.81097 -40.33055 -37.37510 -36.58877 -34.33867 -33.04994 -32.49681 -28.42063 -28.11308 -27.28841 -24.94948 -24.35614 -21.49092 -20.91864 -19.19388 -18.60532 -18.22549 -17.57702 -16.83826 -16.11455 -15.79273 -15.76723 -15.44868 -14.71149 -14.31195 -14.25699 -13.78793 -13.38482 -13.13929 -13.12110 -12.86630 -12.53175 -12.30860 -12.29818 -12.28806 -12.11888 -11.74368 -11.05636 -10.84924 -10.63300 -10.52512 -9.75804 -8.47988 -6.03196 0.23794 0.82759 1.41023 1.43050 1.54874 2.06946 2.30355 2.34935 2.90416 3.03069 3.15373 3.40565 3.94939 4.06888 4.15319 4.18118 4.22525 4.40652 4.59042 4.71310 4.75630 4.85314 4.85702 4.95506 5.10027 5.15381 5.25812 5.39094 5.42407 6.03056 6.39410 7.06949 7.25667 7.32424 7.92260 8.57639 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.007053 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.405758 B = 3968.981353 C = 4479.829379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.031 4.031 3 C -0.131 4.131 4 C 0.057 3.943 5 N -0.368 5.368 6 O 0.096 5.904 7 C -0.020 4.020 8 C -0.254 4.254 9 C 0.501 3.499 10 O -0.623 6.623 11 N -0.439 5.439 12 C 0.088 3.912 13 C -0.351 4.351 14 H 0.074 0.926 15 C 0.009 3.991 16 N -0.879 5.879 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.276 1.276 21 H 0.064 0.936 22 H 0.086 0.914 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.268 0.732 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 7.248 5.577 9.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.050 4.050 3 C -0.189 4.189 4 C -0.106 4.106 5 N -0.074 5.074 6 O 0.036 5.964 7 C -0.101 4.101 8 C -0.262 4.262 9 C 0.291 3.709 10 O -0.512 6.512 11 N -0.155 5.155 12 C -0.054 4.054 13 C -0.479 4.479 14 H 0.092 0.908 15 C -0.196 4.196 16 N -0.515 5.515 17 Si 0.811 3.189 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.200 1.200 21 H 0.083 0.917 22 H 0.104 0.896 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.283 0.717 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.508 8.086 5.774 10.247 hybrid contribution 0.942 -1.362 -1.141 2.011 sum -1.566 6.724 4.634 8.314 Atomic orbital electron populations 1.21736 0.92191 1.01606 1.03381 1.19810 0.97323 0.96316 0.91584 1.21745 1.00551 0.93184 1.03405 1.25007 0.97153 0.94085 0.94343 1.73459 1.17537 1.14942 1.01489 1.84497 1.48518 1.29896 1.33533 1.27873 0.96040 0.94673 0.91517 1.22524 1.07737 1.00897 0.94994 1.17255 0.81662 0.84630 0.87325 1.90536 1.63959 1.72510 1.24201 1.43628 1.33735 1.30044 1.08135 1.22143 1.01587 0.99537 0.82134 1.19602 1.38703 0.98755 0.90812 0.90800 1.26085 0.99040 0.94874 0.99565 1.70066 1.39488 1.11922 1.30009 0.85010 0.78476 0.77255 0.78180 1.18565 1.19884 1.20035 0.91689 0.89553 0.94089 0.89918 0.93691 0.89585 0.91694 0.71670 0.91943 0.91468 0.89927 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.18 71.98 0.66 -3.07 16 2 C -0.03 -1.05 3.33 -11.54 -0.04 -1.09 16 3 C -0.13 -3.60 9.18 71.98 0.66 -2.94 16 4 C 0.06 2.14 6.09 45.16 0.28 2.41 16 5 N -0.37 -12.62 12.01 -44.75 -0.54 -13.15 16 6 O 0.10 2.96 11.06 76.85 0.85 3.81 16 7 C -0.02 -0.62 10.28 67.63 0.70 0.07 16 8 C -0.25 -10.42 6.27 -18.74 -0.12 -10.54 16 9 C 0.50 25.57 7.62 86.63 0.66 26.23 16 10 O -0.62 -36.26 15.03 -4.13 -0.06 -36.33 16 11 N -0.44 -22.26 3.00 -662.74 -1.99 -24.25 16 12 C 0.09 3.51 7.17 127.77 0.92 4.43 16 13 C -0.35 -19.51 9.17 84.07 0.77 -18.74 16 14 H 0.07 4.43 7.51 -2.91 -0.02 4.41 16 15 C 0.01 0.46 4.78 84.93 0.41 0.86 16 16 N -0.88 -44.21 11.48 21.67 0.25 -43.96 16 17 Si 0.99 40.37 29.61 68.60 2.03 42.40 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 19 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 21 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 22 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 3.37 6.35 -2.39 -0.02 3.36 16 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.27 6.44 4.81 -2.91 -0.01 6.43 16 29 H 0.06 2.44 7.58 -2.38 -0.02 2.42 16 30 H 0.07 2.80 6.93 -2.38 -0.02 2.78 16 31 H 0.08 2.57 4.84 -2.39 -0.01 2.56 16 32 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 Total: -1.00 -66.73 271.74 6.57 -60.16 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 1.14 Total: 13.68 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 4.89 Total: -2.37 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -2.28 Total: -81.36 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: 0.79 Total: -32.51 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -66.73 6.57 -60.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528315539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.616 kcal (2) G-P(sol) polarization free energy of solvation -66.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds