Wall clock time and date at job start Sun Mar 29 2020 22:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41373 * 126.80207 * 2 1 4 4 C 1.35456 * 103.99023 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.78222 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46944 * 89.99762 * 5 4 3 7 7 O 1.21283 * 120.00472 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99538 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 5 10 10 H 1.08999 * 109.47480 * 35.27807 * 9 8 6 11 11 C 1.53008 * 109.47014 * 275.27733 * 9 8 6 12 12 C 1.50696 * 109.47278 * 155.27952 * 9 8 6 13 13 H 1.08002 * 120.00157 * 359.97438 * 12 9 8 14 14 C 1.37881 * 120.00447 * 179.97438 * 12 9 8 15 15 N 1.31510 * 119.99635 * 359.97438 * 14 12 9 16 16 Si 1.86792 * 120.00210 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47212 * 89.99990 * 16 14 12 18 18 H 1.48498 * 109.47421 * 210.00302 * 16 14 12 19 19 H 1.48504 * 109.47342 * 330.00327 * 16 14 12 20 20 O 1.34044 * 106.43998 * 0.24014 * 4 3 2 21 21 N 1.20921 * 111.56816 * 359.56288 * 20 4 3 22 22 H 1.08998 * 109.46897 * 89.99996 * 1 2 3 23 23 H 1.08999 * 109.46999 * 210.00409 * 1 2 3 24 24 H 1.09002 * 109.47219 * 329.99892 * 1 2 3 25 25 H 1.08008 * 128.00828 * 0.03025 * 3 2 1 26 26 H 1.09003 * 109.46601 * 330.00202 * 5 4 3 27 27 H 1.08993 * 109.46922 * 210.00502 * 5 4 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 29 29 H 1.09005 * 109.46722 * 180.02562 * 11 9 8 30 30 H 1.09000 * 109.47169 * 299.99790 * 11 9 8 31 31 H 1.08995 * 109.47066 * 60.00517 * 11 9 8 32 32 H 0.97000 * 120.00295 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9023 1.3695 -0.0014 6 6 5.3362 1.6240 1.4192 7 8 4.6572 1.2249 2.3415 8 7 6.4794 2.2943 1.6647 9 6 6.8982 2.5469 3.0456 10 1 6.6186 1.6991 3.6710 11 6 6.2105 3.8117 3.5638 12 6 8.3929 2.7333 3.0911 13 1 8.9730 2.6695 2.1824 14 6 9.0200 2.9853 4.2929 15 7 8.3136 3.0634 5.3995 16 14 10.8728 3.2156 4.3494 17 1 11.1990 4.6522 4.1620 18 1 11.3887 2.7584 5.6647 19 1 11.5039 2.4194 3.2663 20 8 3.4538 -0.7253 -0.0063 21 7 2.2869 -1.0423 -0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 2.0709 2.1743 0.0004 26 1 4.7648 2.3210 -0.5153 27 1 5.6657 0.7858 -0.5156 28 1 7.0227 2.6132 0.9271 29 1 6.5225 3.9999 4.5912 30 1 6.4902 4.6595 2.9385 31 1 5.1294 3.6768 3.5310 32 1 8.7548 3.2403 6.2451 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557596094.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:43 Heat of formation + Delta-G solvation = 11.802201 kcal Electronic energy + Delta-G solvation = -16465.754268 eV Core-core repulsion = 13622.523176 eV Total energy + Delta-G solvation = -2843.231092 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.74507 -38.96695 -34.95122 -34.65355 -33.18894 -32.39516 -29.50754 -28.65131 -27.58778 -25.28248 -22.99330 -21.68021 -20.04226 -19.43946 -17.73831 -17.21371 -16.74149 -15.71085 -15.26963 -14.87305 -14.60935 -14.02981 -13.41686 -13.34585 -13.03571 -12.99699 -12.48785 -12.40763 -12.16013 -11.65309 -11.13538 -11.00777 -10.93308 -10.76059 -10.35844 -10.26445 -9.88986 -9.48880 -9.09021 -8.97836 -8.58940 -7.99006 -6.14920 -4.24671 1.59446 2.34205 3.14050 3.22809 3.27858 3.30544 3.32673 4.07164 4.27710 4.35929 4.49193 5.05339 5.14689 5.17663 5.29019 5.38039 5.39133 5.49610 5.58757 5.79161 5.88043 6.18555 6.78347 6.91516 7.10582 7.38878 7.50373 7.65305 7.87136 8.11385 8.40169 8.57605 8.73372 9.03208 9.42859 10.91078 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.058279 B = 0.004659 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.331444 B = 6008.088185 C = 6165.464768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.013 3.987 3 C -0.226 4.226 4 C 0.007 3.993 5 C -0.068 4.068 6 C 0.502 3.498 7 O -0.546 6.546 8 N -0.705 5.705 9 C 0.264 3.736 10 H 0.049 0.951 11 C -0.147 4.147 12 C -0.535 4.535 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.883 5.883 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 O 0.102 5.898 21 N -0.369 5.369 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.169 0.831 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.391 0.609 29 H 0.090 0.910 30 H 0.027 0.973 31 H 0.014 0.986 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.877 -0.600 -12.370 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C -0.248 4.248 4 C -0.058 4.058 5 C -0.109 4.109 6 C 0.286 3.714 7 O -0.424 6.424 8 N -0.354 5.354 9 C 0.162 3.838 10 H 0.067 0.933 11 C -0.206 4.206 12 C -0.573 4.573 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.730 3.270 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 O 0.036 5.964 21 N -0.075 5.075 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.186 0.814 26 H 0.140 0.860 27 H 0.132 0.868 28 H 0.223 0.777 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.544 -2.179 -11.460 15.072 hybrid contribution 1.217 1.240 -0.199 1.748 sum -8.327 -0.939 -11.659 14.358 Atomic orbital electron populations 1.20125 0.86179 1.03726 1.02968 1.23516 0.98871 0.88982 1.03199 1.22299 0.91118 1.00986 1.10367 1.23683 0.97334 0.83671 1.01074 1.20262 0.91979 1.00399 0.98258 1.20062 0.82395 0.79443 0.89533 1.90716 1.54060 1.51769 1.45835 1.46488 1.22073 1.55037 1.11753 1.18779 0.93663 0.94913 0.76410 0.93305 1.22083 0.96311 0.98160 1.04023 1.21207 0.91147 1.50710 0.94281 0.91970 1.24894 0.98740 0.94731 0.95352 1.69899 1.35548 1.47983 0.98618 0.86432 0.84615 0.78372 0.77587 1.20542 1.21061 1.19808 1.84783 1.21534 1.22723 1.67379 1.73793 0.89341 1.24205 1.20131 0.90432 0.90715 0.90107 0.81373 0.86015 0.86758 0.77697 0.89104 0.95407 0.96668 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.47 36.01 0.38 -0.34 16 2 C 0.01 0.18 7.33 -82.10 -0.60 -0.42 16 3 C -0.23 -3.11 11.06 -39.38 -0.44 -3.55 16 4 C 0.01 0.10 5.98 -35.30 -0.21 -0.11 16 5 C -0.07 -0.87 6.27 -29.04 -0.18 -1.05 16 6 C 0.50 9.46 7.78 -10.99 -0.09 9.38 16 7 O -0.55 -13.00 15.70 5.55 0.09 -12.92 16 8 N -0.71 -13.81 5.07 -54.93 -0.28 -14.09 16 9 C 0.26 6.57 2.56 -69.08 -0.18 6.40 16 10 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 11 C -0.15 -3.59 9.26 37.16 0.34 -3.24 16 12 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 15 N -0.88 -24.69 11.32 55.43 0.63 -24.06 16 16 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 20 O 0.10 1.70 11.20 17.17 0.19 1.89 16 21 N -0.37 -6.14 12.07 33.42 0.40 -5.74 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 26 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.39 6.30 8.54 -40.82 -0.35 5.95 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 284.24 15.07 4.28 4.28 Total: -1.00 -32.60 284.24 -5.05 -37.65 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -3.98 Total: 3.12 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.37 Total: -5.45 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.75 Total: -43.89 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.28 Total: -11.02 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.60 -5.05 -37.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557596094.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.450 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds