Wall clock time and date at job start Sun Mar 29 2020 22:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41373 * 126.80207 * 2 1 4 4 C 1.35456 * 103.99023 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.78222 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46944 * 89.99762 * 5 4 3 7 7 O 1.21283 * 120.00472 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99538 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 5 10 10 H 1.08999 * 109.47480 * 35.27807 * 9 8 6 11 11 C 1.53008 * 109.47014 * 275.27733 * 9 8 6 12 12 C 1.50696 * 109.47278 * 155.27952 * 9 8 6 13 13 H 1.08002 * 120.00157 * 359.97438 * 12 9 8 14 14 C 1.37881 * 120.00447 * 179.97438 * 12 9 8 15 15 N 1.31510 * 119.99635 * 359.97438 * 14 12 9 16 16 Si 1.86792 * 120.00210 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47212 * 89.99990 * 16 14 12 18 18 H 1.48498 * 109.47421 * 210.00302 * 16 14 12 19 19 H 1.48504 * 109.47342 * 330.00327 * 16 14 12 20 20 O 1.34044 * 106.43998 * 0.24014 * 4 3 2 21 21 N 1.20921 * 111.56816 * 359.56288 * 20 4 3 22 22 H 1.08998 * 109.46897 * 89.99996 * 1 2 3 23 23 H 1.08999 * 109.46999 * 210.00409 * 1 2 3 24 24 H 1.09002 * 109.47219 * 329.99892 * 1 2 3 25 25 H 1.08008 * 128.00828 * 0.03025 * 3 2 1 26 26 H 1.09003 * 109.46601 * 330.00202 * 5 4 3 27 27 H 1.08993 * 109.46922 * 210.00502 * 5 4 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 29 29 H 1.09005 * 109.46722 * 180.02562 * 11 9 8 30 30 H 1.09000 * 109.47169 * 299.99790 * 11 9 8 31 31 H 1.08995 * 109.47066 * 60.00517 * 11 9 8 32 32 H 0.97000 * 120.00295 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9023 1.3695 -0.0014 6 6 5.3362 1.6240 1.4192 7 8 4.6572 1.2249 2.3415 8 7 6.4794 2.2943 1.6647 9 6 6.8982 2.5469 3.0456 10 1 6.6186 1.6991 3.6710 11 6 6.2105 3.8117 3.5638 12 6 8.3929 2.7333 3.0911 13 1 8.9730 2.6695 2.1824 14 6 9.0200 2.9853 4.2929 15 7 8.3136 3.0634 5.3995 16 14 10.8728 3.2156 4.3494 17 1 11.1990 4.6522 4.1620 18 1 11.3887 2.7584 5.6647 19 1 11.5039 2.4194 3.2663 20 8 3.4538 -0.7253 -0.0063 21 7 2.2869 -1.0423 -0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 2.0709 2.1743 0.0004 26 1 4.7648 2.3210 -0.5153 27 1 5.6657 0.7858 -0.5156 28 1 7.0227 2.6132 0.9271 29 1 6.5225 3.9999 4.5912 30 1 6.4902 4.6595 2.9385 31 1 5.1294 3.6768 3.5310 32 1 8.7548 3.2403 6.2451 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557596094.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:43 Heat of formation + Delta-G solvation = -11.217722 kcal Electronic energy + Delta-G solvation = -16466.752487 eV Core-core repulsion = 13622.523176 eV Total energy + Delta-G solvation = -2844.229311 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.85732 -40.56262 -36.77434 -35.70821 -34.47525 -34.17971 -31.20891 -29.55815 -28.92580 -27.31709 -24.12057 -23.36039 -21.50215 -20.85494 -19.16952 -18.50441 -18.10199 -17.35380 -17.07998 -16.23468 -16.06799 -15.40318 -14.72982 -14.46010 -14.36009 -14.15608 -13.94026 -13.76264 -13.35871 -13.19123 -12.96034 -12.79383 -12.66749 -12.26777 -12.12842 -12.00679 -11.08578 -10.96571 -10.92227 -10.59187 -10.28141 -9.75659 -8.16237 -6.33797 0.45881 1.28944 1.46808 1.47916 1.58184 1.78529 2.10265 2.39535 2.72966 3.14778 3.32155 3.45990 3.96155 4.11294 4.23720 4.38762 4.59217 4.63834 4.70696 4.77731 4.91662 4.93436 4.96426 5.11315 5.27850 5.45439 5.62085 5.70580 5.92062 6.11567 6.74849 6.95127 7.29043 7.34202 7.56682 8.90062 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.058279 B = 0.004659 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.331444 B = 6008.088185 C = 6165.464768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.009 3.991 3 C -0.227 4.227 4 C -0.012 4.012 5 C -0.050 4.050 6 C 0.499 3.501 7 O -0.602 6.602 8 N -0.699 5.699 9 C 0.269 3.731 10 H -0.006 1.006 11 C -0.133 4.133 12 C -0.545 4.545 13 H 0.078 0.922 14 C 0.013 3.987 15 N -0.920 5.920 16 Si 0.973 3.027 17 H -0.270 1.270 18 H -0.290 1.290 19 H -0.262 1.262 20 O 0.074 5.926 21 N -0.403 5.403 22 H 0.100 0.900 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.196 0.804 26 H 0.169 0.831 27 H 0.146 0.854 28 H 0.411 0.589 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.012 0.988 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.505 0.517 -14.572 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.150 4.150 3 C -0.248 4.248 4 C -0.075 4.075 5 C -0.090 4.090 6 C 0.286 3.714 7 O -0.484 6.484 8 N -0.348 5.348 9 C 0.165 3.835 10 H 0.012 0.988 11 C -0.192 4.192 12 C -0.584 4.584 13 H 0.096 0.904 14 C -0.187 4.187 15 N -0.558 5.558 16 Si 0.797 3.203 17 H -0.196 1.196 18 H -0.216 1.216 19 H -0.186 1.186 20 O 0.012 5.988 21 N -0.112 5.112 22 H 0.119 0.881 23 H 0.091 0.909 24 H 0.117 0.883 25 H 0.213 0.787 26 H 0.187 0.813 27 H 0.164 0.836 28 H 0.247 0.753 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.138 -1.049 -13.724 16.521 hybrid contribution 1.010 0.877 0.495 1.426 sum -8.128 -0.172 -13.229 15.528 Atomic orbital electron populations 1.20321 0.83413 1.04564 1.04717 1.24281 1.00755 0.88620 1.01327 1.22772 0.90655 1.02195 1.09199 1.24165 0.98683 0.83315 1.01378 1.20308 0.91874 1.02943 0.93887 1.21051 0.81086 0.77603 0.91688 1.90698 1.55595 1.53677 1.48453 1.46174 1.22914 1.55458 1.10293 1.18345 0.93700 0.92881 0.78567 0.98792 1.21891 0.95951 0.98627 1.02747 1.21577 0.91737 1.50111 0.94929 0.90400 1.25819 1.03477 0.94424 0.95008 1.70062 1.37493 1.49033 0.99219 0.85333 0.78817 0.78695 0.77423 1.19558 1.21595 1.18638 1.84732 1.21843 1.23869 1.68315 1.73786 0.89706 1.25666 1.22067 0.88115 0.90860 0.88265 0.78667 0.81309 0.83615 0.75280 0.91813 0.93627 0.96905 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.47 71.24 0.75 -0.54 16 2 C 0.01 0.24 7.33 43.58 0.32 0.56 16 3 C -0.23 -5.79 11.06 22.40 0.25 -5.54 16 4 C -0.01 -0.33 5.98 25.04 0.15 -0.18 16 5 C -0.05 -1.13 6.27 29.10 0.18 -0.95 16 6 C 0.50 18.29 7.78 87.66 0.68 18.97 16 7 O -0.60 -29.25 15.70 -3.04 -0.05 -29.30 16 8 N -0.70 -26.53 5.07 -446.09 -2.26 -28.79 16 9 C 0.27 13.55 2.56 44.25 0.11 13.66 16 10 H -0.01 -0.36 7.58 -2.39 -0.02 -0.37 16 11 C -0.13 -6.57 9.26 71.98 0.67 -5.91 16 12 C -0.55 -28.01 8.73 25.60 0.22 -27.79 16 13 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 14 C 0.01 0.67 5.30 84.66 0.45 1.11 16 15 N -0.92 -52.50 11.32 21.45 0.24 -52.26 16 16 Si 0.97 41.22 29.54 68.60 2.03 43.24 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 O 0.07 2.48 11.20 71.60 0.80 3.28 16 21 N -0.40 -13.36 12.07 -49.55 -0.60 -13.96 16 22 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.20 3.68 8.06 -2.91 -0.02 3.66 16 26 H 0.17 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.15 2.42 8.14 -2.39 -0.02 2.41 16 28 H 0.41 12.14 8.54 -92.71 -0.79 11.35 16 29 H 0.06 3.49 6.07 -2.38 -0.01 3.48 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -74.06 284.24 4.29 -69.77 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.34 Total: 14.59 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 3.78 Total: -6.59 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -2.62 Total: -95.00 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: 0.75 Total: -26.02 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -74.06 4.29 -69.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557596094.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.556 kcal (2) G-P(sol) polarization free energy of solvation -74.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds