Wall clock time and date at job start Sun Mar 29 2020 22:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41375 * 126.80452 * 2 1 4 4 C 1.35447 * 103.98579 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.77613 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46930 * 90.00748 * 5 4 3 7 7 O 1.21290 * 119.99977 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00516 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00694 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.46342 * 324.99575 * 9 8 6 11 11 C 1.52998 * 109.47185 * 84.99510 * 9 8 6 12 12 C 1.50701 * 109.47260 * 204.99997 * 9 8 6 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27562 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 O 1.34040 * 106.44922 * 0.24486 * 4 3 2 21 21 N 1.20922 * 111.56184 * 359.56281 * 20 4 3 22 22 H 1.08996 * 109.47010 * 89.99570 * 1 2 3 23 23 H 1.09001 * 109.47149 * 210.00081 * 1 2 3 24 24 H 1.09000 * 109.46994 * 329.99794 * 1 2 3 25 25 H 1.07999 * 128.00776 * 0.04281 * 3 2 1 26 26 H 1.09003 * 109.47417 * 330.01156 * 5 4 3 27 27 H 1.08994 * 109.47506 * 210.00036 * 5 4 3 28 28 H 0.97006 * 119.99365 * 359.97438 * 8 6 5 29 29 H 1.09004 * 109.46783 * 180.02562 * 11 9 8 30 30 H 1.09005 * 109.46870 * 300.00240 * 11 9 8 31 31 H 1.08998 * 109.47156 * 60.00179 * 11 9 8 32 32 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9022 1.3694 -0.0014 6 6 5.3363 1.6237 1.4192 7 8 4.6568 1.2252 2.3415 8 7 6.4789 2.2947 1.6649 9 6 6.9012 2.5414 3.0459 10 1 6.0232 2.7087 3.6698 11 6 7.6738 1.3282 3.5674 12 6 7.7882 3.7589 3.0901 13 1 8.0151 4.2950 2.1804 14 6 8.3151 4.1847 4.2909 15 7 8.0391 3.5316 5.3986 16 14 9.4210 5.6892 4.3446 17 1 9.5752 6.2393 2.9739 18 1 8.8139 6.7186 5.2262 19 1 10.7534 5.3056 4.8763 20 8 3.4537 -0.7254 -0.0064 21 7 2.2868 -1.0424 -0.0007 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 2.0710 2.1742 0.0006 26 1 4.7649 2.3209 -0.5151 27 1 5.6657 0.7857 -0.5155 28 1 7.0222 2.6137 0.9273 29 1 7.9876 1.5117 4.5951 30 1 7.0322 0.4476 3.5354 31 1 8.5518 1.1609 2.9434 32 1 8.4101 3.8310 6.2433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557596098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:46 Heat of formation + Delta-G solvation = 11.725875 kcal Electronic energy + Delta-G solvation = -16465.223025 eV Core-core repulsion = 13621.988623 eV Total energy + Delta-G solvation = -2843.234402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.74548 -38.96504 -34.95146 -34.65230 -33.18730 -32.39849 -29.50333 -28.64913 -27.58580 -25.28151 -22.98901 -21.68599 -20.02921 -19.44295 -17.73843 -17.20871 -16.74735 -15.73695 -15.30705 -14.82211 -14.60278 -13.93980 -13.45752 -13.40755 -13.03005 -12.99536 -12.55636 -12.35490 -12.09022 -11.68463 -11.11835 -11.01829 -10.94975 -10.75430 -10.33435 -10.26896 -9.88748 -9.48837 -9.08775 -8.97540 -8.58998 -7.99089 -6.15401 -4.25232 1.59478 2.34490 3.13844 3.21583 3.28908 3.29758 3.31996 4.06835 4.27927 4.35648 4.49410 5.05891 5.14138 5.17274 5.29871 5.38235 5.39533 5.49913 5.59365 5.80023 5.87991 6.18953 6.79786 6.93911 7.11826 7.39232 7.50769 7.65272 7.87334 8.11621 8.40062 8.57559 8.73100 9.03181 9.42417 10.90567 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.054003 B = 0.004646 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.368289 B = 6024.821934 C = 6076.436450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.013 3.987 3 C -0.225 4.225 4 C 0.006 3.994 5 C -0.068 4.068 6 C 0.502 3.498 7 O -0.546 6.546 8 N -0.705 5.705 9 C 0.264 3.736 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.534 4.534 13 H 0.063 0.937 14 C 0.066 3.934 15 N -0.883 5.883 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 O 0.101 5.899 21 N -0.370 5.370 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.169 0.831 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.391 0.609 29 H 0.090 0.910 30 H 0.015 0.985 31 H 0.027 0.973 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 -2.420 -12.380 14.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C -0.247 4.247 4 C -0.058 4.058 5 C -0.109 4.109 6 C 0.286 3.714 7 O -0.424 6.424 8 N -0.354 5.354 9 C 0.162 3.838 10 H 0.067 0.933 11 C -0.207 4.207 12 C -0.573 4.573 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 O 0.035 5.965 21 N -0.075 5.075 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.187 0.813 26 H 0.140 0.860 27 H 0.132 0.868 28 H 0.223 0.777 29 H 0.109 0.891 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.467 -4.017 -11.476 14.816 hybrid contribution 0.866 1.835 -0.188 2.038 sum -7.601 -2.181 -11.664 14.092 Atomic orbital electron populations 1.20126 0.86174 1.03737 1.02973 1.23518 0.98874 0.88980 1.03163 1.22307 0.91119 1.01018 1.10260 1.23679 0.97351 0.83654 1.01125 1.20262 0.91941 1.00421 0.98251 1.20065 0.82270 0.79570 0.89537 1.90718 1.54343 1.51492 1.45843 1.46490 1.22278 1.54826 1.11756 1.18784 0.95167 0.93435 0.76387 0.93324 1.22084 0.98138 0.96423 1.04011 1.21244 1.30568 1.11187 0.94279 0.91930 1.24896 0.96294 0.97174 0.95367 1.69912 1.44108 1.39400 0.98597 0.86385 0.80158 0.82325 0.78166 1.19711 1.20874 1.20861 1.84778 1.21545 1.22728 1.67421 1.73789 0.89339 1.24205 1.20180 0.90429 0.90719 0.90087 0.81336 0.85956 0.86827 0.77696 0.89097 0.96605 0.95370 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.47 36.01 0.38 -0.34 16 2 C 0.01 0.19 7.33 -82.10 -0.60 -0.41 16 3 C -0.23 -3.13 11.06 -39.38 -0.44 -3.56 16 4 C 0.01 0.09 5.98 -35.30 -0.21 -0.12 16 5 C -0.07 -0.87 6.27 -29.03 -0.18 -1.05 16 6 C 0.50 9.46 7.79 -10.99 -0.09 9.37 16 7 O -0.55 -13.01 15.70 5.55 0.09 -12.92 16 8 N -0.71 -13.81 5.07 -54.93 -0.28 -14.09 16 9 C 0.26 6.57 2.56 -69.08 -0.18 6.39 16 10 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 11 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 12 C -0.53 -13.80 8.73 -34.44 -0.30 -14.10 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 15 N -0.88 -24.64 11.31 55.43 0.63 -24.01 16 16 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 O 0.10 1.68 11.20 17.18 0.19 1.87 16 21 N -0.37 -6.13 12.07 33.42 0.40 -5.73 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 26 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.39 6.30 8.54 -40.82 -0.35 5.95 16 29 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 284.22 15.07 4.28 4.28 Total: -1.00 -32.54 284.22 -5.05 -37.59 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.98 Total: 3.26 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.37 Total: -5.48 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.75 Total: -43.83 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.28 Total: -11.04 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.54 -5.05 -37.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557596098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.318 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds