Wall clock time and date at job start Sun Mar 29 2020 22:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41375 * 126.80452 * 2 1 4 4 C 1.35447 * 103.98579 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.77613 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46930 * 90.00748 * 5 4 3 7 7 O 1.21290 * 119.99977 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00516 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00694 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.46342 * 324.99575 * 9 8 6 11 11 C 1.52998 * 109.47185 * 84.99510 * 9 8 6 12 12 C 1.50701 * 109.47260 * 204.99997 * 9 8 6 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27562 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 O 1.34040 * 106.44922 * 0.24486 * 4 3 2 21 21 N 1.20922 * 111.56184 * 359.56281 * 20 4 3 22 22 H 1.08996 * 109.47010 * 89.99570 * 1 2 3 23 23 H 1.09001 * 109.47149 * 210.00081 * 1 2 3 24 24 H 1.09000 * 109.46994 * 329.99794 * 1 2 3 25 25 H 1.07999 * 128.00776 * 0.04281 * 3 2 1 26 26 H 1.09003 * 109.47417 * 330.01156 * 5 4 3 27 27 H 1.08994 * 109.47506 * 210.00036 * 5 4 3 28 28 H 0.97006 * 119.99365 * 359.97438 * 8 6 5 29 29 H 1.09004 * 109.46783 * 180.02562 * 11 9 8 30 30 H 1.09005 * 109.46870 * 300.00240 * 11 9 8 31 31 H 1.08998 * 109.47156 * 60.00179 * 11 9 8 32 32 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9022 1.3694 -0.0014 6 6 5.3363 1.6237 1.4192 7 8 4.6568 1.2252 2.3415 8 7 6.4789 2.2947 1.6649 9 6 6.9012 2.5414 3.0459 10 1 6.0232 2.7087 3.6698 11 6 7.6738 1.3282 3.5674 12 6 7.7882 3.7589 3.0901 13 1 8.0151 4.2950 2.1804 14 6 8.3151 4.1847 4.2909 15 7 8.0391 3.5316 5.3986 16 14 9.4210 5.6892 4.3446 17 1 9.5752 6.2393 2.9739 18 1 8.8139 6.7186 5.2262 19 1 10.7534 5.3056 4.8763 20 8 3.4537 -0.7254 -0.0064 21 7 2.2868 -1.0424 -0.0007 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 2.0710 2.1742 0.0006 26 1 4.7649 2.3209 -0.5151 27 1 5.6657 0.7857 -0.5155 28 1 7.0222 2.6137 0.9273 29 1 7.9876 1.5117 4.5951 30 1 7.0322 0.4476 3.5354 31 1 8.5518 1.1609 2.9434 32 1 8.4101 3.8310 6.2433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557596098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:45 Heat of formation + Delta-G solvation = -11.192532 kcal Electronic energy + Delta-G solvation = -16466.216841 eV Core-core repulsion = 13621.988623 eV Total energy + Delta-G solvation = -2844.228219 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.85980 -40.56213 -36.77678 -35.71024 -34.47514 -34.17926 -31.21170 -29.55953 -28.93129 -27.32138 -24.11730 -23.37365 -21.49472 -20.85823 -19.16901 -18.50399 -18.10276 -17.36273 -17.11025 -16.24646 -16.00247 -15.34378 -14.78483 -14.60162 -14.27578 -14.15376 -13.94962 -13.74354 -13.34088 -13.22086 -12.92816 -12.80507 -12.71146 -12.26718 -12.09480 -12.00988 -11.07961 -10.96732 -10.92273 -10.59825 -10.28142 -9.76015 -8.15965 -6.33593 0.45710 1.28579 1.46732 1.48015 1.59821 1.78485 2.10013 2.39479 2.73026 3.15168 3.31786 3.46051 3.96014 4.11038 4.23727 4.38730 4.59057 4.64068 4.70477 4.76653 4.91517 4.92179 4.95965 5.11094 5.27500 5.44782 5.62410 5.69870 5.91361 6.10967 6.75362 6.95035 7.28783 7.34490 7.56705 8.90619 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.054003 B = 0.004646 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.368289 B = 6024.821934 C = 6076.436450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.009 3.991 3 C -0.228 4.228 4 C -0.011 4.011 5 C -0.050 4.050 6 C 0.499 3.501 7 O -0.602 6.602 8 N -0.699 5.699 9 C 0.269 3.731 10 H -0.003 1.003 11 C -0.135 4.135 12 C -0.543 4.543 13 H 0.079 0.921 14 C 0.012 3.988 15 N -0.920 5.920 16 Si 0.973 3.027 17 H -0.256 1.256 18 H -0.286 1.286 19 H -0.281 1.281 20 O 0.076 5.924 21 N -0.402 5.402 22 H 0.100 0.900 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.195 0.805 26 H 0.168 0.832 27 H 0.148 0.852 28 H 0.411 0.589 29 H 0.064 0.936 30 H 0.008 0.992 31 H 0.043 0.957 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 -0.967 -14.614 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.150 4.150 3 C -0.250 4.250 4 C -0.075 4.075 5 C -0.090 4.090 6 C 0.286 3.714 7 O -0.484 6.484 8 N -0.348 5.348 9 C 0.166 3.834 10 H 0.015 0.985 11 C -0.194 4.194 12 C -0.581 4.581 13 H 0.097 0.903 14 C -0.188 4.188 15 N -0.559 5.559 16 Si 0.798 3.202 17 H -0.179 1.179 18 H -0.212 1.212 19 H -0.207 1.207 20 O 0.014 5.986 21 N -0.111 5.111 22 H 0.119 0.881 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.212 0.788 26 H 0.185 0.815 27 H 0.166 0.834 28 H 0.247 0.753 29 H 0.083 0.917 30 H 0.027 0.973 31 H 0.063 0.937 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.229 -2.555 -13.772 16.246 hybrid contribution 0.718 1.359 0.518 1.622 sum -7.511 -1.196 -13.254 15.281 Atomic orbital electron populations 1.20320 0.83437 1.04555 1.04718 1.24268 1.00746 0.88602 1.01351 1.22769 0.90763 1.02182 1.09237 1.24153 0.98655 0.83330 1.01362 1.20307 0.91908 1.02895 0.93884 1.21055 0.80974 0.77715 0.91690 1.90700 1.55828 1.53447 1.48464 1.46173 1.23161 1.55201 1.10292 1.18344 0.93001 0.93522 0.78576 0.98516 1.21914 0.98506 0.96181 1.02823 1.21600 1.30169 1.11405 0.94940 0.90258 1.25827 0.97781 1.00148 0.95016 1.70071 1.45390 1.41193 0.99244 0.85277 0.77842 0.78346 0.78737 1.17935 1.21195 1.20727 1.84729 1.21817 1.23790 1.68287 1.73780 0.89709 1.25607 1.22048 0.88112 0.90815 0.88331 0.78811 0.81500 0.83402 0.75273 0.91701 0.97259 0.93746 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.47 71.24 0.75 -0.56 16 2 C 0.01 0.24 7.33 43.58 0.32 0.56 16 3 C -0.23 -5.90 11.06 22.40 0.25 -5.65 16 4 C -0.01 -0.31 5.98 25.04 0.15 -0.16 16 5 C -0.05 -1.12 6.27 29.10 0.18 -0.94 16 6 C 0.50 18.27 7.79 87.66 0.68 18.96 16 7 O -0.60 -29.26 15.70 -3.06 -0.05 -29.31 16 8 N -0.70 -26.49 5.07 -446.09 -2.26 -28.75 16 9 C 0.27 13.56 2.56 44.24 0.11 13.68 16 10 H 0.00 -0.19 7.58 -2.38 -0.02 -0.20 16 11 C -0.14 -6.81 9.26 71.98 0.67 -6.15 16 12 C -0.54 -27.66 8.73 25.60 0.22 -27.44 16 13 H 0.08 3.69 7.74 -2.91 -0.02 3.66 16 14 C 0.01 0.63 5.30 84.65 0.45 1.08 16 15 N -0.92 -52.42 11.31 21.45 0.24 -52.18 16 16 Si 0.97 40.91 29.54 68.60 2.03 42.93 16 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 20 O 0.08 2.51 11.20 71.63 0.80 3.31 16 21 N -0.40 -13.27 12.07 -49.55 -0.60 -13.87 16 22 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.19 3.79 8.06 -2.91 -0.02 3.77 16 26 H 0.17 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.41 12.12 8.54 -92.70 -0.79 11.33 16 29 H 0.06 3.61 6.06 -2.38 -0.01 3.59 16 30 H 0.01 0.42 8.14 -2.38 -0.02 0.41 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -73.72 284.22 4.29 -69.43 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.34 Total: 15.06 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 3.78 Total: -6.62 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -2.62 Total: -94.80 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: 0.75 Total: -26.00 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -73.72 4.29 -69.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557596098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.236 kcal (2) G-P(sol) polarization free energy of solvation -73.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds