Wall clock time and date at job start Sun Mar 29 2020 22:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41384 * 126.80066 * 2 1 4 4 C 1.35452 * 103.98455 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.77723 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46869 * 89.99853 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46506 * 120.00264 * 0.28128 * 8 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 8 6 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 8 14 14 N 1.31519 * 120.00096 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47135 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47061 * 119.99902 * 15 13 11 18 18 H 1.48503 * 109.47075 * 240.00004 * 15 13 11 19 19 O 1.34041 * 106.44938 * 0.24064 * 4 3 2 20 20 N 1.20920 * 111.56141 * 359.56362 * 19 4 3 21 21 H 1.08998 * 109.47243 * 90.00559 * 1 2 3 22 22 H 1.08999 * 109.46953 * 210.00217 * 1 2 3 23 23 H 1.09001 * 109.47297 * 329.99841 * 1 2 3 24 24 H 1.07999 * 128.00812 * 0.03402 * 3 2 1 25 25 H 1.09004 * 109.47210 * 330.00146 * 5 4 3 26 26 H 1.08994 * 109.47551 * 209.99798 * 5 4 3 27 27 H 1.08998 * 109.46921 * 89.99095 * 9 8 6 28 28 H 1.08994 * 109.46996 * 209.99677 * 9 8 6 29 29 H 1.09001 * 109.46578 * 329.99540 * 9 8 6 30 30 H 1.09001 * 109.47567 * 210.00057 * 10 8 6 31 31 H 1.09005 * 109.47076 * 330.00563 * 10 8 6 32 32 H 0.96991 * 119.99957 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 -0.0006 5 6 4.9021 1.3696 -0.0014 6 6 5.3361 1.6240 1.4192 7 8 4.6570 1.2249 2.3415 8 7 6.4818 2.2899 1.6648 9 6 7.3024 2.7717 0.5508 10 6 6.9068 2.5320 3.0458 11 6 7.7671 1.3871 3.5146 12 1 7.9768 0.5617 2.8503 13 6 8.2866 1.3930 4.7918 14 7 8.0309 2.3978 5.6010 15 14 9.3537 -0.0259 5.3728 16 1 9.4885 -1.0233 4.2808 17 1 10.6971 0.4854 5.7455 18 1 8.7231 -0.6681 6.5540 19 8 3.4538 -0.7253 -0.0063 20 7 2.2869 -1.0422 -0.0005 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 2.0709 2.1743 0.0005 25 1 4.7648 2.3210 -0.5153 26 1 5.6657 0.7859 -0.5155 27 1 6.9889 3.7793 0.2779 28 1 8.3501 2.7858 0.8509 29 1 7.1785 2.1083 -0.3051 30 1 7.4783 3.4590 3.0929 31 1 6.0291 2.6133 3.6870 32 1 8.3967 2.4021 6.4993 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565071628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:32 Heat of formation + Delta-G solvation = 22.707414 kcal Electronic energy + Delta-G solvation = -16615.622737 eV Core-core repulsion = 13772.864530 eV Total energy + Delta-G solvation = -2842.758207 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.70729 -39.04777 -34.94399 -34.62751 -33.27125 -32.52139 -28.94446 -28.61983 -27.29903 -25.69603 -23.10023 -22.73389 -20.21132 -18.62319 -17.46514 -16.98646 -16.55017 -16.16412 -15.41599 -14.92939 -14.53503 -13.96479 -13.56913 -13.38462 -12.96567 -12.84127 -12.71946 -12.28998 -12.20566 -11.91168 -11.82073 -11.22046 -10.96558 -10.86246 -10.61151 -10.17691 -9.85651 -9.64214 -9.41889 -8.90084 -8.45439 -7.72549 -6.06385 -4.11163 1.63074 2.37441 3.17838 3.29236 3.29955 3.37997 3.42864 3.95369 4.30970 4.43813 4.51497 5.01183 5.11105 5.19497 5.29024 5.30636 5.40727 5.43960 5.59156 5.60195 5.80081 5.85775 5.91251 6.15875 6.21552 6.98134 7.39119 7.47092 7.89820 8.20067 8.30427 8.43968 8.85062 8.99879 9.54210 11.01864 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032716 B = 0.005644 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.650260 B = 4959.854847 C = 5280.666524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.013 3.987 3 C -0.227 4.227 4 C 0.007 3.993 5 C -0.066 4.066 6 C 0.505 3.495 7 O -0.531 6.531 8 N -0.600 5.600 9 C 0.080 3.920 10 C 0.245 3.755 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 O 0.102 5.898 20 N -0.369 5.369 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.169 0.831 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.909 1.223 -14.506 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C -0.249 4.249 4 C -0.057 4.057 5 C -0.107 4.107 6 C 0.290 3.710 7 O -0.408 6.408 8 N -0.332 5.332 9 C -0.064 4.064 10 C 0.126 3.874 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 O 0.037 5.963 20 N -0.074 5.074 21 H 0.095 0.905 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.186 0.814 25 H 0.138 0.862 26 H 0.132 0.868 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.434 -0.233 -13.807 16.181 hybrid contribution 0.684 0.182 0.436 0.831 sum -7.750 -0.051 -13.371 15.455 Atomic orbital electron populations 1.20119 0.86196 1.03725 1.02934 1.23508 0.98848 0.88979 1.03234 1.22284 0.91092 1.00956 1.10529 1.23710 0.97339 0.83706 1.00986 1.20287 0.91802 1.00161 0.98412 1.19940 0.81994 0.79548 0.89475 1.90729 1.54089 1.50186 1.45811 1.48137 1.20894 1.54633 1.09541 1.21708 0.97238 0.98108 0.89385 1.19332 0.96096 0.96615 0.75361 1.21472 1.30462 1.06049 0.98626 0.92313 1.24939 0.96581 0.96210 0.96368 1.69939 1.45097 1.30830 1.07530 0.86435 0.79836 0.82276 0.78856 1.19734 1.20932 1.20856 1.84791 1.21518 1.22708 1.67325 1.73792 0.89344 1.24222 1.20075 0.90454 0.90717 0.90120 0.81395 0.86178 0.86849 0.93470 0.90482 0.92290 0.94781 0.93783 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.47 36.00 0.38 -0.36 16 2 C 0.01 0.19 7.33 -82.10 -0.60 -0.41 16 3 C -0.23 -3.22 11.06 -39.38 -0.44 -3.65 16 4 C 0.01 0.11 5.98 -35.30 -0.21 -0.11 16 5 C -0.07 -0.90 4.82 -29.03 -0.14 -1.04 16 6 C 0.51 10.12 7.67 -10.98 -0.08 10.04 16 7 O -0.53 -13.46 15.61 5.55 0.09 -13.37 16 8 N -0.60 -12.14 2.86 -182.95 -0.52 -12.66 16 9 C 0.08 1.13 10.25 59.85 0.61 1.74 16 10 C 0.24 6.30 5.16 -5.20 -0.03 6.28 16 11 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 12 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 15 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 O 0.10 1.80 11.20 17.17 0.19 1.99 16 20 N -0.37 -6.37 12.07 33.42 0.40 -5.97 16 21 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 25 H 0.12 1.17 8.11 -51.93 -0.42 0.75 16 26 H 0.11 1.28 7.40 -51.93 -0.38 0.90 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 29 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 30 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 285.71 15.07 4.31 4.31 Total: -1.00 -35.23 285.71 -4.77 -40.00 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -4.02 Total: -4.31 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.93 Total: -1.07 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.62 Total: -44.46 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.28 Total: -11.38 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.23 -4.77 -40.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565071628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.702 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds