Wall clock time and date at job start Sun Mar 29 2020 22:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41384 * 126.80066 * 2 1 4 4 C 1.35452 * 103.98455 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.77723 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46869 * 89.99853 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46506 * 120.00264 * 0.28128 * 8 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 8 6 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 8 14 14 N 1.31519 * 120.00096 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47135 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47061 * 119.99902 * 15 13 11 18 18 H 1.48503 * 109.47075 * 240.00004 * 15 13 11 19 19 O 1.34041 * 106.44938 * 0.24064 * 4 3 2 20 20 N 1.20920 * 111.56141 * 359.56362 * 19 4 3 21 21 H 1.08998 * 109.47243 * 90.00559 * 1 2 3 22 22 H 1.08999 * 109.46953 * 210.00217 * 1 2 3 23 23 H 1.09001 * 109.47297 * 329.99841 * 1 2 3 24 24 H 1.07999 * 128.00812 * 0.03402 * 3 2 1 25 25 H 1.09004 * 109.47210 * 330.00146 * 5 4 3 26 26 H 1.08994 * 109.47551 * 209.99798 * 5 4 3 27 27 H 1.08998 * 109.46921 * 89.99095 * 9 8 6 28 28 H 1.08994 * 109.46996 * 209.99677 * 9 8 6 29 29 H 1.09001 * 109.46578 * 329.99540 * 9 8 6 30 30 H 1.09001 * 109.47567 * 210.00057 * 10 8 6 31 31 H 1.09005 * 109.47076 * 330.00563 * 10 8 6 32 32 H 0.96991 * 119.99957 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 -0.0006 5 6 4.9021 1.3696 -0.0014 6 6 5.3361 1.6240 1.4192 7 8 4.6570 1.2249 2.3415 8 7 6.4818 2.2899 1.6648 9 6 7.3024 2.7717 0.5508 10 6 6.9068 2.5320 3.0458 11 6 7.7671 1.3871 3.5146 12 1 7.9768 0.5617 2.8503 13 6 8.2866 1.3930 4.7918 14 7 8.0309 2.3978 5.6010 15 14 9.3537 -0.0259 5.3728 16 1 9.4885 -1.0233 4.2808 17 1 10.6971 0.4854 5.7455 18 1 8.7231 -0.6681 6.5540 19 8 3.4538 -0.7253 -0.0063 20 7 2.2869 -1.0422 -0.0005 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 2.0709 2.1743 0.0005 25 1 4.7648 2.3210 -0.5153 26 1 5.6657 0.7859 -0.5155 27 1 6.9889 3.7793 0.2779 28 1 8.3501 2.7858 0.8509 29 1 7.1785 2.1083 -0.3051 30 1 7.4783 3.4590 3.0929 31 1 6.0291 2.6133 3.6870 32 1 8.3967 2.4021 6.4993 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565071628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:32 Heat of formation + Delta-G solvation = -1.971265 kcal Electronic energy + Delta-G solvation = -16616.692885 eV Core-core repulsion = 13772.864530 eV Total energy + Delta-G solvation = -2843.828355 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.85679 -40.63486 -36.64014 -35.71243 -34.85033 -34.23776 -30.52772 -29.55236 -28.81132 -27.19782 -24.89659 -24.01309 -21.45135 -20.04704 -18.74556 -18.66072 -18.18395 -17.62444 -17.03677 -16.50815 -16.11594 -15.34296 -14.76616 -14.41465 -14.23824 -14.13323 -13.94866 -13.73213 -13.45185 -13.31640 -13.18085 -13.00871 -12.78605 -12.50239 -12.21574 -12.01495 -11.67469 -10.92566 -10.89222 -10.65343 -10.26412 -9.42544 -8.23450 -6.37711 0.45420 1.28904 1.35542 1.38514 1.49851 1.78079 2.08202 2.35758 2.53928 3.06664 3.32267 3.44604 3.76060 4.06707 4.17051 4.36489 4.44286 4.60470 4.62085 4.70780 4.80713 4.91534 4.93243 5.01747 5.08253 5.23965 5.28271 5.55857 5.83106 6.05690 6.68799 6.76809 7.27315 7.28862 7.44567 8.83756 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032716 B = 0.005644 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.650260 B = 4959.854847 C = 5280.666524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.010 3.990 3 C -0.226 4.226 4 C -0.012 4.012 5 C -0.047 4.047 6 C 0.496 3.504 7 O -0.598 6.598 8 N -0.606 5.606 9 C 0.071 3.929 10 C 0.258 3.742 11 C -0.543 4.543 12 H 0.054 0.946 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.965 3.035 16 H -0.267 1.267 17 H -0.267 1.267 18 H -0.284 1.284 19 O 0.072 5.928 20 N -0.403 5.403 21 H 0.101 0.899 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.198 0.802 25 H 0.171 0.829 26 H 0.144 0.856 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.028 0.972 31 H -0.004 1.004 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.775 1.525 -16.588 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.149 4.149 3 C -0.247 4.247 4 C -0.076 4.076 5 C -0.087 4.087 6 C 0.284 3.716 7 O -0.480 6.480 8 N -0.337 5.337 9 C -0.070 4.070 10 C 0.136 3.864 11 C -0.581 4.581 12 H 0.072 0.928 13 C -0.191 4.191 14 N -0.568 5.568 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.192 1.192 18 H -0.211 1.211 19 O 0.011 5.989 20 N -0.113 5.113 21 H 0.120 0.880 22 H 0.091 0.909 23 H 0.118 0.882 24 H 0.215 0.785 25 H 0.188 0.812 26 H 0.161 0.839 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.046 0.954 31 H 0.015 0.985 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.249 0.095 -15.950 17.957 hybrid contribution 0.579 0.148 1.071 1.226 sum -7.671 0.243 -14.880 16.742 Atomic orbital electron populations 1.20323 0.83344 1.04561 1.04765 1.24289 1.00764 0.88590 1.01241 1.22773 0.90535 1.02233 1.09189 1.24191 0.98735 0.83323 1.01379 1.20347 0.91704 1.02787 0.93866 1.21035 0.80950 0.77886 0.91691 1.90696 1.56019 1.52691 1.48586 1.48138 1.21921 1.54762 1.08842 1.22081 0.95694 1.00830 0.88408 1.18773 0.93522 0.95728 0.78328 1.21769 1.30792 1.06544 0.99026 0.92810 1.25836 0.97932 0.98811 0.96548 1.70048 1.46164 1.32669 1.07968 0.85402 0.78534 0.78991 0.78099 1.19150 1.19185 1.21052 1.84735 1.21897 1.23928 1.68375 1.73783 0.89688 1.25747 1.22096 0.88009 0.90926 0.88216 0.78515 0.81182 0.83863 0.90279 0.91637 0.87965 0.95352 0.98539 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.47 71.23 0.75 -0.58 16 2 C 0.01 0.28 7.33 43.58 0.32 0.59 16 3 C -0.23 -5.96 11.06 22.40 0.25 -5.71 16 4 C -0.01 -0.37 5.98 25.04 0.15 -0.22 16 5 C -0.05 -1.14 4.82 29.10 0.14 -1.00 16 6 C 0.50 19.52 7.67 87.66 0.67 20.19 16 7 O -0.60 -31.23 15.61 -3.04 -0.05 -31.27 16 8 N -0.61 -24.09 2.86 -851.12 -2.43 -26.52 16 9 C 0.07 1.81 10.25 127.77 1.31 3.12 16 10 C 0.26 13.68 5.16 85.63 0.44 14.12 16 11 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 12 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 13 C 0.01 0.44 5.46 84.66 0.46 0.90 16 14 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 15 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 19 O 0.07 2.53 11.20 71.63 0.80 3.33 16 20 N -0.40 -13.90 12.07 -49.54 -0.60 -14.50 16 21 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.20 3.79 8.06 -2.91 -0.02 3.77 16 25 H 0.17 2.39 8.11 -2.38 -0.02 2.37 16 26 H 0.14 2.63 7.40 -2.39 -0.02 2.61 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.83 8.07 -2.39 -0.02 1.81 16 29 H 0.10 1.71 6.43 -2.39 -0.02 1.70 16 30 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 31 H 0.00 -0.22 7.42 -2.38 -0.02 -0.24 16 32 H 0.27 15.14 8.31 -92.72 -0.77 14.37 16 Total: -1.00 -81.73 285.71 5.88 -75.84 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 1.12 Total: 1.37 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 4.73 Total: 0.43 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -2.74 Total: -97.03 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: 0.75 Total: -27.94 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -81.73 5.88 -75.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565071628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.873 kcal (2) G-P(sol) polarization free energy of solvation -81.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds