Wall clock time and date at job start Sun Mar 29 2020 22:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35448 * 126.77714 * 2 1 4 4 C 1.41379 * 103.98624 * 180.09657 * 3 2 1 5 5 C 1.50700 * 126.80478 * 179.88633 * 4 3 2 6 6 N 1.46498 * 109.46769 * 94.71449 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72341 * 6 5 4 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99463 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00445 * 180.02562 * 11 10 9 14 14 N 1.31524 * 120.00004 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00395 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46989 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46903 * 119.99599 * 15 13 11 18 18 H 1.48498 * 109.47416 * 240.00014 * 15 13 11 19 19 N 1.30176 * 106.39512 * 359.63539 * 4 3 2 20 20 O 1.20923 * 111.60228 * 0.23088 * 19 4 3 21 21 H 1.08995 * 109.47419 * 180.29963 * 1 2 3 22 22 H 1.09002 * 109.47078 * 300.29387 * 1 2 3 23 23 H 1.08994 * 109.47300 * 60.29325 * 1 2 3 24 24 H 1.07999 * 128.00837 * 359.96959 * 3 2 1 25 25 H 1.09004 * 109.47210 * 334.71806 * 5 4 3 26 26 H 1.08994 * 109.47121 * 214.71776 * 5 4 3 27 27 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 28 28 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 29 29 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 30 30 H 1.08998 * 109.47508 * 300.00200 * 10 9 7 31 31 H 1.09011 * 109.47182 * 60.00188 * 10 9 7 32 32 H 0.96991 * 119.99897 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0023 5 6 4.9211 1.2999 -0.0057 6 7 5.4025 1.4503 1.3697 7 6 6.5590 2.0988 1.6118 8 8 7.1984 2.5623 0.6914 9 6 7.0575 2.2480 3.0261 10 6 8.3795 3.0180 3.0223 11 6 8.8784 3.1667 4.4366 12 1 8.3091 2.7536 5.2562 13 6 10.0609 3.8309 4.6843 14 7 10.7539 4.3344 3.6862 15 14 10.6788 4.0159 6.4374 16 1 9.7237 3.3654 7.3701 17 1 12.0103 3.3704 6.5635 18 1 10.7941 5.4580 6.7721 19 7 3.4763 -0.7564 0.0045 20 8 2.3095 -1.0736 0.0060 21 1 -0.3634 -1.0276 0.0054 22 1 -0.3633 0.5184 0.8874 23 1 -0.3633 0.5092 -0.8925 24 1 2.0345 2.1270 -0.0005 25 1 4.7632 2.2849 -0.4451 26 1 5.6607 0.7548 -0.5921 27 1 4.8913 1.0793 2.1059 28 1 6.3209 2.7943 3.6152 29 1 7.2125 1.2613 3.4627 30 1 9.1163 2.4721 2.4331 31 1 8.2241 4.0048 2.5859 32 1 11.5856 4.8020 3.8606 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572660174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:28 Heat of formation + Delta-G solvation = 7.549947 kcal Electronic energy + Delta-G solvation = -15841.455790 eV Core-core repulsion = 12998.040306 eV Total energy + Delta-G solvation = -2843.415484 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.21783 -39.16567 -35.66114 -33.93713 -33.44290 -32.97304 -30.97957 -28.17782 -27.60737 -25.26542 -23.32641 -21.66247 -20.48050 -19.62422 -17.90630 -17.52391 -16.86787 -15.80925 -15.59310 -15.19914 -14.58125 -14.39523 -14.15442 -13.67330 -13.33041 -13.19567 -12.94493 -12.58342 -12.16690 -12.05483 -11.37159 -11.15704 -10.93550 -10.64701 -10.55027 -9.95468 -9.67107 -9.62848 -9.17506 -9.00776 -8.87253 -8.31292 -5.95236 -3.99557 1.17193 1.84017 2.81405 3.22058 3.33456 3.40315 3.43734 3.61218 3.91491 4.15627 4.48667 4.71700 4.86070 4.97200 4.97873 5.24117 5.32783 5.39767 5.48742 5.64948 5.71405 5.80892 6.22962 6.24918 6.59236 6.89200 7.75542 7.82195 7.87103 7.99980 8.08058 8.39334 8.73250 9.09087 9.63996 11.15794 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.057326 B = 0.003660 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.319748 B = 7648.929040 C = 7877.239958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.221 4.221 4 C 0.005 3.995 5 C 0.199 3.801 6 N -0.740 5.740 7 C 0.512 3.488 8 O -0.533 6.533 9 C -0.129 4.129 10 C 0.036 3.964 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.350 5.350 20 O 0.105 5.895 21 H 0.082 0.918 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.174 0.826 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.399 0.601 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.288 -7.969 -6.551 24.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C -0.243 4.243 4 C -0.154 4.154 5 C 0.075 3.925 6 N -0.395 5.395 7 C 0.301 3.699 8 O -0.407 6.407 9 C -0.169 4.169 10 C -0.001 4.001 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.052 5.052 20 O 0.035 5.965 21 H 0.101 0.899 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.191 0.809 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.232 0.768 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.760 -8.545 -7.280 23.601 hybrid contribution -0.227 0.722 1.221 1.436 sum -20.987 -7.823 -6.059 23.203 Atomic orbital electron populations 1.20344 0.83884 1.04713 1.04196 1.24541 0.96471 0.86117 1.02863 1.22467 0.91110 1.01264 1.09479 1.23631 0.97395 0.90072 1.04266 1.19393 0.88497 0.98622 0.86014 1.46198 1.25598 1.60319 1.07433 1.21616 0.78888 0.76022 0.93375 1.90679 1.56026 1.47308 1.46726 1.21873 1.02125 1.02958 0.89903 1.18915 0.88899 0.95445 0.96870 1.21260 1.06636 1.35909 0.92662 0.92540 1.25032 0.96792 0.95613 0.97009 1.70011 1.15205 1.37016 1.30611 0.86528 0.78755 0.77749 0.84881 1.19748 1.21017 1.21015 1.73921 0.96817 1.16369 1.18091 1.84853 1.11301 1.33297 1.67026 0.89861 0.89059 0.89125 0.80866 0.89346 0.89995 0.76775 0.90136 0.90145 0.95762 0.95747 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.45 36.01 0.38 0.10 16 2 C -0.04 -0.30 7.49 -35.30 -0.26 -0.56 16 3 C -0.22 -2.02 11.06 -39.38 -0.44 -2.46 16 4 C 0.01 0.06 6.70 -82.10 -0.55 -0.49 16 5 C 0.20 2.71 6.26 -5.19 -0.03 2.67 16 6 N -0.74 -11.10 5.55 -61.47 -0.34 -11.44 16 7 C 0.51 10.09 7.83 -10.98 -0.09 10.01 16 8 O -0.53 -12.70 15.98 5.55 0.09 -12.62 16 9 C -0.13 -2.66 5.64 -27.89 -0.16 -2.82 16 10 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 11 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 N -0.35 -4.58 12.07 33.42 0.40 -4.18 16 20 O 0.10 1.15 11.20 17.19 0.19 1.34 16 21 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 22 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 24 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 25 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.40 5.07 8.46 -40.82 -0.35 4.73 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 30 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.02 0.72 8.10 -51.92 -0.42 0.30 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 288.95 15.07 4.35 4.35 Total: -1.00 -35.21 288.95 -5.38 -40.58 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.11 Total: -1.43 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.68 Total: -6.51 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.80 Total: -42.54 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.28 Total: -11.28 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.21 -5.38 -40.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572660174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.134 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds