Wall clock time and date at job start Sun Mar 29 2020 22:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47324 * 2 1 4 4 N 1.30016 * 127.33332 * 270.00326 * 3 2 1 5 5 O 1.20656 * 112.30041 * 179.97438 * 4 3 2 6 6 C 1.33499 * 113.15795 * 359.75713 * 5 4 3 7 7 C 1.37362 * 106.33709 * 0.38708 * 6 5 4 8 8 C 1.47402 * 128.56305 * 179.91214 * 7 6 5 9 9 O 1.21603 * 120.00063 * 179.67612 * 8 7 6 10 10 N 1.34777 * 119.99679 * 359.67301 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72400 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99720 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00513 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99651 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47115 * 89.99974 * 17 15 13 19 19 H 1.48509 * 109.46780 * 210.00159 * 17 15 13 20 20 H 1.48497 * 109.46888 * 329.99916 * 17 15 13 21 21 H 1.08998 * 109.47148 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47035 * 299.99885 * 1 2 3 23 23 H 1.08998 * 109.47538 * 60.00247 * 1 2 3 24 24 H 1.09001 * 109.47035 * 240.00115 * 2 1 3 25 25 H 1.09004 * 109.47255 * 120.00108 * 2 1 3 26 26 H 1.07993 * 126.83299 * 180.30026 * 6 5 4 27 27 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 28 28 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 29 29 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 30 30 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 31 31 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 32 32 H 0.96999 * 120.00239 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2951 2.1642 -1.0338 5 8 2.6831 3.2630 -0.7208 6 6 2.7408 3.4427 0.6007 7 6 2.3292 2.2621 1.1696 8 6 2.2087 1.9239 2.5992 9 8 1.8184 0.8214 2.9323 10 7 2.5310 2.8365 3.5371 11 6 2.4055 2.5024 4.9579 12 6 2.8249 3.7062 5.8040 13 6 2.6963 3.3623 7.2656 14 1 2.3497 2.3831 7.5614 15 6 3.0213 4.2977 8.2250 16 7 3.4429 5.4902 7.8647 17 14 2.8612 3.8715 10.0368 18 1 4.1390 3.2928 10.5239 19 1 2.5485 5.1011 10.8087 20 1 1.7687 2.8822 10.2179 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.0509 4.3378 1.1195 27 1 2.8420 3.7161 3.2714 28 1 1.3699 2.2450 5.1806 29 1 3.0487 1.6536 5.1898 30 1 3.8604 3.9636 5.5813 31 1 2.1816 4.5551 5.5721 32 1 3.6719 6.1480 8.5397 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597494401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:58 Heat of formation + Delta-G solvation = 1.881578 kcal Electronic energy + Delta-G solvation = -16227.182125 eV Core-core repulsion = 13383.520842 eV Total energy + Delta-G solvation = -2843.661283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.96788 -39.19838 -35.43577 -34.82876 -33.09807 -32.19937 -31.29149 -29.59737 -25.66990 -24.42903 -23.77727 -21.22750 -20.87115 -20.30712 -18.12984 -17.74820 -16.62138 -16.31600 -15.46713 -14.93300 -14.67327 -14.49218 -14.29487 -13.64823 -13.18178 -13.10223 -12.70901 -12.35412 -11.75935 -11.65324 -11.27939 -11.09139 -10.97859 -10.69061 -10.42704 -10.04238 -9.97744 -9.80130 -9.61053 -9.31161 -8.65335 -8.43689 -6.14564 -4.17660 1.04193 1.73994 2.89203 3.26553 3.32889 3.36291 3.39867 3.51153 3.96971 4.22665 4.38077 4.80283 5.03980 5.11858 5.21932 5.22918 5.29555 5.41526 5.76174 5.80861 6.07112 6.15363 6.24612 6.25439 6.63494 6.74676 7.43587 7.53333 7.81683 7.84015 8.11759 8.20742 8.45925 8.88067 9.47706 10.97021 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044746 B = 0.004448 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.610180 B = 6293.616595 C = 6816.685978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.070 3.930 4 N -0.363 5.363 5 O 0.094 5.906 6 C -0.011 4.011 7 C -0.245 4.245 8 C 0.584 3.416 9 O -0.536 6.536 10 N -0.714 5.714 11 C 0.122 3.878 12 C 0.012 3.988 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.227 0.773 27 H 0.396 0.604 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 -4.073 -14.831 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C -0.092 4.092 4 N -0.070 5.070 5 O 0.035 5.965 6 C -0.093 4.093 7 C -0.253 4.253 8 C 0.369 3.631 9 O -0.414 6.414 10 N -0.363 5.363 11 C 0.001 3.999 12 C -0.025 4.025 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.120 0.880 26 H 0.244 0.756 27 H 0.230 0.770 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.244 -4.850 -15.801 16.681 hybrid contribution 0.187 0.468 1.791 1.861 sum -2.057 -4.382 -14.010 14.823 Atomic orbital electron populations 1.21658 0.93676 1.02417 1.02224 1.20037 0.96736 0.87402 1.04316 1.24881 0.99052 0.98885 0.86421 1.73642 1.16896 0.92736 1.23689 1.84552 1.62192 1.26646 1.23160 1.26474 0.98634 1.00259 0.83911 1.22570 1.11577 0.94990 0.96143 1.16896 0.78291 0.84986 0.82901 1.90762 1.46919 1.21842 1.81926 1.46198 1.66210 1.15939 1.07953 1.21805 1.01073 1.00790 0.76273 1.19339 0.97180 0.91788 0.94232 1.21030 1.45107 0.99627 0.90390 0.92190 1.24987 0.94895 0.94883 0.99426 1.69944 1.44649 1.04785 1.33899 0.86508 0.78595 0.77917 0.84525 1.20528 1.21141 1.19696 0.91546 0.91895 0.92889 0.90235 0.88041 0.75641 0.77044 0.92205 0.92196 0.95862 0.95860 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 37.15 0.37 -1.20 16 2 C -0.05 -0.57 6.20 -27.88 -0.17 -0.74 16 3 C 0.07 0.96 6.84 -79.77 -0.55 0.42 16 4 N -0.36 -4.88 12.01 34.78 0.42 -4.46 16 5 O 0.09 1.10 11.06 18.64 0.21 1.30 16 6 C -0.01 -0.11 11.85 30.41 0.36 0.25 16 7 C -0.25 -3.36 6.47 -102.89 -0.67 -4.03 16 8 C 0.58 9.70 7.81 -12.53 -0.10 9.60 16 9 O -0.54 -10.53 15.70 5.27 0.08 -10.45 16 10 N -0.71 -11.67 5.55 -61.39 -0.34 -12.01 16 11 C 0.12 2.47 5.61 -4.04 -0.02 2.44 16 12 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 13 C -0.52 -14.08 9.11 -34.44 -0.31 -14.39 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 17 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.10 1.34 7.11 -51.93 -0.37 0.97 16 26 H 0.23 1.33 7.68 -52.49 -0.40 0.93 16 27 H 0.40 5.31 7.66 -40.82 -0.31 5.00 16 28 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 286.43 15.07 4.32 4.32 Total: -1.00 -31.37 286.43 -4.94 -36.31 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.01 Total: -0.22 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.33 Total: -5.95 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.81 Total: -41.21 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.29 Total: -9.14 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.37 -4.94 -36.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597494401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.188 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds