Wall clock time and date at job start Sun Mar 29 2020 22:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47324 * 2 1 4 4 N 1.30016 * 127.33332 * 270.00326 * 3 2 1 5 5 O 1.20656 * 112.30041 * 179.97438 * 4 3 2 6 6 C 1.33499 * 113.15795 * 359.75713 * 5 4 3 7 7 C 1.37362 * 106.33709 * 0.38708 * 6 5 4 8 8 C 1.47402 * 128.56305 * 179.91214 * 7 6 5 9 9 O 1.21603 * 120.00063 * 179.67612 * 8 7 6 10 10 N 1.34777 * 119.99679 * 359.67301 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72400 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99720 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00513 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99651 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47115 * 89.99974 * 17 15 13 19 19 H 1.48509 * 109.46780 * 210.00159 * 17 15 13 20 20 H 1.48497 * 109.46888 * 329.99916 * 17 15 13 21 21 H 1.08998 * 109.47148 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47035 * 299.99885 * 1 2 3 23 23 H 1.08998 * 109.47538 * 60.00247 * 1 2 3 24 24 H 1.09001 * 109.47035 * 240.00115 * 2 1 3 25 25 H 1.09004 * 109.47255 * 120.00108 * 2 1 3 26 26 H 1.07993 * 126.83299 * 180.30026 * 6 5 4 27 27 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 28 28 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 29 29 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 30 30 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 31 31 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 32 32 H 0.96999 * 120.00239 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2951 2.1642 -1.0338 5 8 2.6831 3.2630 -0.7208 6 6 2.7408 3.4427 0.6007 7 6 2.3292 2.2621 1.1696 8 6 2.2087 1.9239 2.5992 9 8 1.8184 0.8214 2.9323 10 7 2.5310 2.8365 3.5371 11 6 2.4055 2.5024 4.9579 12 6 2.8249 3.7062 5.8040 13 6 2.6963 3.3623 7.2656 14 1 2.3497 2.3831 7.5614 15 6 3.0213 4.2977 8.2250 16 7 3.4429 5.4902 7.8647 17 14 2.8612 3.8715 10.0368 18 1 4.1390 3.2928 10.5239 19 1 2.5485 5.1011 10.8087 20 1 1.7687 2.8822 10.2179 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.0509 4.3378 1.1195 27 1 2.8420 3.7161 3.2714 28 1 1.3699 2.2450 5.1806 29 1 3.0487 1.6536 5.1898 30 1 3.8604 3.9636 5.5813 31 1 2.1816 4.5551 5.5721 32 1 3.6719 6.1480 8.5397 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597494401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:58 Heat of formation + Delta-G solvation = -19.234202 kcal Electronic energy + Delta-G solvation = -16228.097774 eV Core-core repulsion = 13383.520842 eV Total energy + Delta-G solvation = -2844.576932 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.96555 -40.57288 -36.74892 -36.12586 -34.89947 -33.41754 -32.25257 -31.32514 -27.26542 -25.63724 -25.00505 -22.92352 -21.95520 -21.52567 -19.27368 -18.74560 -18.49705 -17.55235 -16.83780 -16.46191 -16.42237 -15.75856 -15.29969 -14.86663 -14.77655 -14.28976 -14.20607 -13.64807 -13.21840 -12.93985 -12.74733 -12.55968 -12.50026 -12.24330 -11.93767 -11.68473 -11.46921 -11.08982 -11.00681 -10.81091 -10.58723 -10.05150 -8.22844 -6.32459 0.06840 0.70998 1.43541 1.44063 1.54943 1.89509 2.14387 2.29674 2.45910 2.96854 3.12723 3.28412 3.80826 3.96772 4.21933 4.30461 4.33472 4.50674 4.50975 4.60388 4.83269 4.87327 4.93607 5.12780 5.20826 5.26867 5.48881 5.60653 5.79986 6.17514 6.53190 6.80661 7.14297 7.18325 7.36939 8.88808 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044746 B = 0.004448 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.610180 B = 6293.616595 C = 6816.685978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 C 0.060 3.940 4 N -0.375 5.375 5 O 0.099 5.901 6 C 0.032 3.968 7 C -0.281 4.281 8 C 0.589 3.411 9 O -0.572 6.572 10 N -0.706 5.706 11 C 0.142 3.858 12 C 0.022 3.978 13 C -0.547 4.547 14 H 0.058 0.942 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.961 3.039 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.267 1.267 21 H 0.083 0.917 22 H 0.041 0.959 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.273 0.727 27 H 0.412 0.588 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.012 0.988 31 H 0.012 0.988 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 -3.671 -15.293 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 C -0.102 4.102 4 N -0.083 5.083 5 O 0.041 5.959 6 C -0.050 4.050 7 C -0.288 4.288 8 C 0.376 3.624 9 O -0.453 6.453 10 N -0.357 5.357 11 C 0.019 3.981 12 C -0.016 4.016 13 C -0.585 4.585 14 H 0.077 0.923 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.786 3.214 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.191 1.191 21 H 0.102 0.898 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.288 0.712 27 H 0.248 0.752 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.114 -4.431 -16.297 17.020 hybrid contribution 0.167 0.383 1.875 1.921 sum -1.947 -4.048 -14.422 15.105 Atomic orbital electron populations 1.21616 0.93000 1.03372 1.01402 1.20080 0.97307 0.86961 1.04331 1.25146 0.99007 0.99545 0.86523 1.73652 1.17645 0.93245 1.23759 1.84548 1.61604 1.26018 1.23719 1.27223 0.94666 1.00118 0.83036 1.22266 1.15137 0.96951 0.94461 1.17155 0.77075 0.84200 0.83942 1.90742 1.48506 1.23362 1.82721 1.45910 1.66494 1.16895 1.06404 1.21289 1.00007 0.98782 0.78043 1.19150 0.96196 0.92597 0.93612 1.21466 1.45044 0.99710 0.92281 0.92347 1.25802 0.94520 0.94772 1.03796 1.70037 1.45449 1.05649 1.35338 0.85502 0.78785 0.77822 0.79292 1.19874 1.20633 1.19143 0.89780 0.93991 0.92252 0.88534 0.89611 0.71163 0.75164 0.93208 0.93170 0.96943 0.96936 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.89 71.98 0.71 -2.21 16 2 C -0.05 -1.15 6.20 29.85 0.18 -0.97 16 3 C 0.06 1.59 6.84 45.16 0.31 1.90 16 4 N -0.38 -9.44 12.01 -44.78 -0.54 -9.98 16 5 O 0.10 2.05 11.06 76.93 0.85 2.90 16 6 C 0.03 0.55 11.85 67.61 0.80 1.35 16 7 C -0.28 -7.28 6.47 -18.74 -0.12 -7.40 16 8 C 0.59 19.23 7.81 86.66 0.68 19.91 16 9 O -0.57 -22.77 15.70 -4.04 -0.06 -22.83 16 10 N -0.71 -22.45 5.55 -466.39 -2.59 -25.04 16 11 C 0.14 5.73 5.61 86.38 0.48 6.22 16 12 C 0.02 1.04 5.09 29.85 0.15 1.19 16 13 C -0.55 -29.46 9.11 25.60 0.23 -29.23 16 14 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 15 C 0.01 0.55 5.46 84.65 0.46 1.01 16 16 N -0.93 -52.56 13.29 21.45 0.28 -52.27 16 17 Si 0.96 42.52 29.54 68.60 2.03 44.55 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.09 2.30 7.11 -2.39 -0.02 2.28 16 26 H 0.27 1.91 7.68 -2.91 -0.02 1.89 16 27 H 0.41 10.27 7.66 -92.71 -0.71 9.56 16 28 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -67.28 286.43 4.29 -62.99 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.42 Total: 7.90 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 3.90 Total: -8.22 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -2.84 Total: -87.29 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.79 Total: -19.93 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -67.28 4.29 -62.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597494401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.755 kcal (2) G-P(sol) polarization free energy of solvation -67.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds