Wall clock time and date at job start Sun Mar 29 2020 22:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35318 * 128.03587 * 2 1 4 4 O 1.34011 * 106.66543 * 180.24043 * 3 2 1 5 5 N 1.20911 * 111.85004 * 359.73728 * 4 3 2 6 6 C 1.30985 * 111.43534 * 0.02562 * 5 4 3 7 7 C 1.48326 * 126.93618 * 179.97438 * 6 5 4 8 8 O 1.21498 * 119.99932 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00055 * 0.02907 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46969 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46861 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00200 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99569 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00031 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47485 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46928 * 119.99926 * 17 15 13 20 20 H 1.48505 * 109.46854 * 239.99744 * 17 15 13 21 21 H 1.08998 * 109.47112 * 270.16358 * 1 2 3 22 22 H 1.08998 * 109.47322 * 30.16792 * 1 2 3 23 23 H 1.08994 * 109.46798 * 150.17114 * 1 2 3 24 24 H 1.08000 * 126.66467 * 359.94057 * 3 2 1 25 25 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 26 26 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 27 27 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 28 28 H 1.09004 * 109.46930 * 299.99770 * 11 10 9 29 29 H 1.09004 * 109.47059 * 59.99372 * 11 10 9 30 30 H 1.08992 * 109.47534 * 299.99582 * 12 11 10 31 31 H 1.08996 * 109.47134 * 60.00388 * 12 11 10 32 32 H 0.97002 * 119.99797 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5775 -0.0054 5 7 3.5989 -0.6316 -0.0034 6 6 2.3838 -1.1205 0.0029 7 6 1.9994 -2.5531 0.0065 8 8 0.8257 -2.8671 0.0120 9 7 2.9520 -3.5064 0.0039 10 6 2.5723 -4.9214 0.0069 11 6 3.8333 -5.7879 0.0023 12 6 3.4367 -7.2655 0.0060 13 6 4.6788 -8.1189 0.0009 14 1 5.6535 -7.6538 -0.0050 15 6 4.5708 -9.4935 0.0025 16 7 3.3839 -10.0598 0.0092 17 14 6.1105 -10.5513 -0.0031 18 1 7.3113 -9.6778 -0.0097 19 1 6.1272 -11.4075 1.2101 20 1 6.1167 -11.4097 -1.2150 21 1 -0.3633 0.0029 1.0276 22 1 -0.3634 0.8884 -0.5164 23 1 -0.3633 -0.8915 -0.5112 24 1 2.0559 2.1075 -0.0009 25 1 3.8890 -3.2557 -0.0008 26 1 1.9853 -5.1382 0.8995 27 1 1.9783 -5.1401 -0.8805 28 1 4.4199 -5.5710 -0.8905 29 1 4.4276 -5.5692 0.8894 30 1 2.8505 -7.4821 0.8990 31 1 2.8423 -7.4845 -0.8809 32 1 3.3079 -11.0269 0.0107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601038857.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:54 Heat of formation + Delta-G solvation = 4.543121 kcal Electronic energy + Delta-G solvation = -15950.776255 eV Core-core repulsion = 13107.230385 eV Total energy + Delta-G solvation = -2843.545870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.29518 -39.50214 -35.63666 -34.80834 -33.48270 -32.54817 -31.10198 -28.44371 -27.04250 -24.73367 -22.78177 -21.86677 -20.81096 -20.24089 -18.31554 -17.98663 -16.57670 -16.43970 -15.50502 -15.35298 -14.59371 -14.45767 -13.94565 -13.68725 -13.44666 -13.39670 -12.58982 -12.31355 -11.87643 -11.81155 -11.57258 -10.93275 -10.77831 -10.59568 -10.47234 -10.23326 -9.90036 -9.69049 -9.46057 -9.12710 -8.91313 -8.38396 -6.02898 -4.05852 0.97240 1.46325 2.83575 3.08473 3.14911 3.29905 3.37431 3.41452 3.82962 4.41656 4.44986 4.63405 4.85342 5.19597 5.33105 5.40057 5.42120 5.58255 5.66261 5.71645 6.02894 6.10368 6.34517 6.55291 6.75994 6.95949 7.47563 7.62080 7.73785 7.82787 7.95692 8.14791 8.37061 9.00862 9.58493 11.08457 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.055420 B = 0.003800 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.115346 B = 7367.181470 C = 7841.240517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.151 4.151 3 C -0.071 4.071 4 O 0.123 5.877 5 N -0.331 5.331 6 C -0.026 4.026 7 C 0.591 3.409 8 O -0.524 6.524 9 N -0.708 5.708 10 C 0.116 3.884 11 C -0.122 4.122 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.223 0.777 25 H 0.405 0.595 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 22.721 -0.041 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.156 4.156 3 C -0.152 4.152 4 O 0.047 5.953 5 N -0.031 5.031 6 C -0.185 4.185 7 C 0.374 3.626 8 O -0.399 6.399 9 N -0.359 5.359 10 C -0.006 4.006 11 C -0.160 4.160 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.095 0.905 22 H 0.089 0.911 23 H 0.107 0.893 24 H 0.239 0.761 25 H 0.239 0.761 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.867 21.652 -0.041 21.841 hybrid contribution 0.494 -0.310 0.011 0.583 sum -2.374 21.342 -0.031 21.473 Atomic orbital electron populations 1.20229 0.86536 1.03914 1.03263 1.21403 0.99195 0.90124 1.04864 1.25776 0.82456 1.01275 1.05669 1.84773 1.29467 1.15268 1.65782 1.74186 1.21682 0.91587 1.15674 1.23619 0.89450 0.97481 1.07972 1.16906 0.85860 0.82249 0.77586 1.90776 1.17430 1.81608 1.50123 1.46131 1.09590 1.07285 1.72854 1.21781 0.99469 0.76991 1.02401 1.21916 0.94667 0.98274 1.01136 1.19035 0.97131 0.87484 0.97726 1.21242 0.92790 0.91174 1.50836 0.92551 1.25034 0.96002 0.98205 0.95246 1.69977 1.22365 1.10299 1.50649 0.86516 0.83340 0.80421 0.77606 1.19734 1.20978 1.20984 0.90511 0.91064 0.89313 0.76076 0.76053 0.91251 0.91262 0.92563 0.92565 0.96181 0.96189 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.15 -1.59 6.34 -104.11 -0.66 -2.25 16 3 C -0.07 -0.53 12.24 29.69 0.36 -0.17 16 4 O 0.12 1.24 11.18 17.26 0.19 1.43 16 5 N -0.33 -4.25 11.84 33.29 0.39 -3.86 16 6 C -0.03 -0.35 7.19 -82.53 -0.59 -0.94 16 7 C 0.59 9.59 7.85 -12.11 -0.10 9.49 16 8 O -0.52 -9.69 15.34 5.37 0.08 -9.61 16 9 N -0.71 -11.25 5.55 -61.09 -0.34 -11.59 16 10 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 11 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 16 12 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 13 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.09 0.99 6.89 -51.93 -0.36 0.64 16 24 H 0.22 0.53 8.06 -52.49 -0.42 0.10 16 25 H 0.40 5.80 8.23 -40.82 -0.34 5.46 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 286.54 15.07 4.32 4.32 Total: -1.00 -32.60 286.54 -5.01 -37.62 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.04 Total: -0.97 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.34 Total: -7.79 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.79 Total: -41.60 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.28 Total: -8.17 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.60 -5.01 -37.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038857.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.159 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds