Wall clock time and date at job start Sun Mar 29 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35318 * 128.03587 * 2 1 4 4 O 1.34011 * 106.66543 * 180.24043 * 3 2 1 5 5 N 1.20911 * 111.85004 * 359.73728 * 4 3 2 6 6 C 1.30985 * 111.43534 * 0.02562 * 5 4 3 7 7 C 1.48326 * 126.93618 * 179.97438 * 6 5 4 8 8 O 1.21498 * 119.99932 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00055 * 0.02907 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46969 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46861 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00200 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99569 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00031 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47485 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46928 * 119.99926 * 17 15 13 20 20 H 1.48505 * 109.46854 * 239.99744 * 17 15 13 21 21 H 1.08998 * 109.47112 * 270.16358 * 1 2 3 22 22 H 1.08998 * 109.47322 * 30.16792 * 1 2 3 23 23 H 1.08994 * 109.46798 * 150.17114 * 1 2 3 24 24 H 1.08000 * 126.66467 * 359.94057 * 3 2 1 25 25 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 26 26 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 27 27 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 28 28 H 1.09004 * 109.46930 * 299.99770 * 11 10 9 29 29 H 1.09004 * 109.47059 * 59.99372 * 11 10 9 30 30 H 1.08992 * 109.47534 * 299.99582 * 12 11 10 31 31 H 1.08996 * 109.47134 * 60.00388 * 12 11 10 32 32 H 0.97002 * 119.99797 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5775 -0.0054 5 7 3.5989 -0.6316 -0.0034 6 6 2.3838 -1.1205 0.0029 7 6 1.9994 -2.5531 0.0065 8 8 0.8257 -2.8671 0.0120 9 7 2.9520 -3.5064 0.0039 10 6 2.5723 -4.9214 0.0069 11 6 3.8333 -5.7879 0.0023 12 6 3.4367 -7.2655 0.0060 13 6 4.6788 -8.1189 0.0009 14 1 5.6535 -7.6538 -0.0050 15 6 4.5708 -9.4935 0.0025 16 7 3.3839 -10.0598 0.0092 17 14 6.1105 -10.5513 -0.0031 18 1 7.3113 -9.6778 -0.0097 19 1 6.1272 -11.4075 1.2101 20 1 6.1167 -11.4097 -1.2150 21 1 -0.3633 0.0029 1.0276 22 1 -0.3634 0.8884 -0.5164 23 1 -0.3633 -0.8915 -0.5112 24 1 2.0559 2.1075 -0.0009 25 1 3.8890 -3.2557 -0.0008 26 1 1.9853 -5.1382 0.8995 27 1 1.9783 -5.1401 -0.8805 28 1 4.4199 -5.5710 -0.8905 29 1 4.4276 -5.5692 0.8894 30 1 2.8505 -7.4821 0.8990 31 1 2.8423 -7.4845 -0.8809 32 1 3.3079 -11.0269 0.0107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601038857.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:53 Heat of formation + Delta-G solvation = -18.369237 kcal Electronic energy + Delta-G solvation = -15951.769809 eV Core-core repulsion = 13107.230385 eV Total energy + Delta-G solvation = -2844.539424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.16424 -40.81003 -37.16156 -35.69803 -35.32640 -33.69394 -32.76102 -29.30369 -28.71108 -26.15853 -24.39635 -22.71206 -22.37334 -21.54471 -19.35811 -18.86731 -18.53779 -17.61203 -16.95773 -16.80675 -16.44672 -15.55067 -15.47387 -14.75790 -14.29471 -14.23110 -14.12146 -13.80543 -13.60235 -13.34022 -12.80529 -12.62637 -12.41872 -12.37168 -11.75862 -11.74733 -11.39942 -11.34870 -11.15994 -10.58275 -10.40530 -10.29981 -8.22006 -6.33459 0.03982 0.71490 1.40447 1.40483 1.53952 1.79168 1.96837 2.28654 2.40527 2.85049 3.11805 3.55897 3.87489 4.04726 4.09394 4.11968 4.44140 4.46742 4.77925 4.81147 4.84746 4.85831 4.95029 5.09611 5.21798 5.35800 5.47764 5.65725 5.80738 6.18126 6.24207 6.83312 6.85227 7.04789 7.36109 8.90308 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.055420 B = 0.003800 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.115346 B = 7367.181470 C = 7841.240517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.174 4.174 3 C -0.032 4.032 4 O 0.135 5.865 5 N -0.350 5.350 6 C -0.059 4.059 7 C 0.589 3.411 8 O -0.555 6.555 9 N -0.704 5.704 10 C 0.129 3.871 11 C -0.104 4.104 12 C 0.025 3.975 13 C -0.543 4.543 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.279 1.279 21 H 0.079 0.921 22 H 0.106 0.894 23 H 0.057 0.943 24 H 0.280 0.720 25 H 0.414 0.586 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.066 0.934 30 H -0.004 1.004 31 H -0.004 1.004 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 25.120 -0.049 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.180 4.180 3 C -0.112 4.112 4 O 0.057 5.943 5 N -0.048 5.048 6 C -0.216 4.216 7 C 0.374 3.626 8 O -0.432 6.432 9 N -0.355 5.355 10 C 0.006 3.994 11 C -0.142 4.142 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.184 1.184 19 H -0.204 1.204 20 H -0.204 1.204 21 H 0.097 0.903 22 H 0.125 0.875 23 H 0.076 0.924 24 H 0.296 0.704 25 H 0.250 0.750 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.014 0.986 31 H 0.014 0.986 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.524 24.047 -0.049 24.096 hybrid contribution 0.048 -0.937 0.013 0.938 sum -1.475 23.111 -0.037 23.158 Atomic orbital electron populations 1.20228 0.85742 1.04092 1.03519 1.21713 1.00043 0.89945 1.06264 1.26717 0.80257 1.02677 1.01580 1.84742 1.30885 1.14186 1.64531 1.74191 1.21459 0.92816 1.16338 1.23419 0.90947 0.96506 1.10704 1.17280 0.85314 0.83502 0.76510 1.90752 1.18595 1.82462 1.51398 1.45952 1.10207 1.06303 1.73050 1.21402 0.98172 0.78236 1.01575 1.21623 0.95527 0.94967 1.02035 1.18935 0.95960 0.91029 0.95375 1.21692 0.93757 0.91998 1.50622 0.91767 1.26015 0.99466 0.99835 0.94689 1.70112 1.24862 1.10813 1.51590 0.85354 0.79273 0.78408 0.77731 1.18409 1.20426 1.20434 0.90258 0.87515 0.92431 0.70428 0.75014 0.92182 0.92192 0.91572 0.91575 0.98591 0.98602 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.01 71.24 0.71 -0.57 16 2 C -0.17 -3.31 6.34 -19.53 -0.12 -3.43 16 3 C -0.03 -0.34 12.24 67.15 0.82 0.48 16 4 O 0.14 2.32 11.18 71.92 0.80 3.13 16 5 N -0.35 -8.48 11.84 -49.52 -0.59 -9.06 16 6 C -0.06 -1.56 7.19 42.96 0.31 -1.25 16 7 C 0.59 19.49 7.85 86.93 0.68 20.17 16 8 O -0.55 -21.29 15.34 -3.71 -0.06 -21.35 16 9 N -0.70 -22.65 5.55 -465.48 -2.59 -25.24 16 10 C 0.13 4.78 5.67 86.38 0.49 5.27 16 11 C -0.10 -4.19 5.27 30.59 0.16 -4.03 16 12 C 0.02 1.31 4.97 29.85 0.15 1.45 16 13 C -0.54 -30.82 9.11 25.60 0.23 -30.58 16 14 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 15 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 16 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 17 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.06 1.31 6.89 -2.39 -0.02 1.29 16 24 H 0.28 -0.54 8.06 -2.91 -0.02 -0.57 16 25 H 0.41 11.76 8.23 -92.71 -0.76 11.00 16 26 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 31 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.26 15.16 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -72.81 286.54 4.15 -68.65 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 0.37 Total: 6.67 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 3.90 Total: -12.15 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -2.89 Total: -91.30 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.75 Total: -18.22 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -72.81 4.15 -68.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038857.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.284 kcal (2) G-P(sol) polarization free energy of solvation -72.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds