Wall clock time and date at job start Sun Mar 29 2020 22:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47158 * 259.97571 * 7 6 5 9 9 C 1.34770 * 120.00006 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00129 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99843 * 179.97438 * 9 8 7 12 12 C 1.53005 * 109.46872 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.46725 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00136 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99469 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00673 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99649 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47271 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47035 * 120.00070 * 17 15 13 20 20 H 1.48498 * 109.47326 * 240.00161 * 17 15 13 21 21 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 22 22 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 23 23 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 24 24 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 25 25 H 1.08999 * 109.47083 * 19.97348 * 7 6 5 26 26 H 1.09007 * 109.47121 * 139.97728 * 7 6 5 27 27 H 0.97000 * 119.99417 * 359.97438 * 8 7 6 28 28 H 1.08999 * 109.47043 * 299.99353 * 11 9 8 29 29 H 1.09007 * 109.47038 * 59.99658 * 11 9 8 30 30 H 1.08999 * 109.47183 * 299.99786 * 12 11 9 31 31 H 1.09001 * 109.46729 * 60.00117 * 12 11 9 32 32 H 0.96989 * 120.00485 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 7 1.6036 -2.9997 -1.3480 9 6 1.2153 -4.2680 -1.5870 10 8 1.1607 -5.0673 -0.6765 11 6 0.8491 -4.6929 -2.9858 12 6 0.4484 -6.1695 -2.9817 13 6 0.0816 -6.5943 -4.3804 14 1 0.1299 -5.8825 -5.1911 15 6 -0.3147 -7.8920 -4.6250 16 7 -0.3731 -8.7590 -3.6379 17 14 -0.7687 -8.4187 -6.3588 18 1 -0.6201 -7.2647 -7.2817 19 1 0.1299 -9.5183 -6.7933 20 1 -2.1760 -8.8920 -6.3799 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5133 24 1 4.5339 -1.1535 0.0156 25 1 2.7948 -3.1888 0.3679 26 1 1.1021 -2.7284 0.6704 27 1 1.6470 -2.3603 -2.0761 28 1 0.0135 -4.0903 -3.3416 29 1 1.7059 -4.5511 -3.6447 30 1 1.2843 -6.7719 -2.6261 31 1 -0.4082 -6.3116 -2.3228 32 1 -0.6522 -9.6718 -3.8100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601613602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:42 Heat of formation + Delta-G solvation = 6.499688 kcal Electronic energy + Delta-G solvation = -16060.194228 eV Core-core repulsion = 13216.733201 eV Total energy + Delta-G solvation = -2843.461027 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.21039 -39.19899 -36.01670 -33.96185 -33.46236 -32.07606 -30.93527 -28.96103 -27.38531 -25.25699 -22.12336 -21.59217 -21.33896 -19.72876 -17.83507 -17.76273 -16.86882 -15.80616 -15.61214 -15.35255 -14.71070 -14.41385 -13.85884 -13.56524 -13.19157 -12.99815 -12.85329 -12.65752 -12.18711 -12.01857 -11.33135 -11.17745 -10.95355 -10.59554 -10.25060 -9.98148 -9.90350 -9.68381 -9.17726 -9.00715 -8.87959 -8.33496 -5.97408 -4.01830 1.18047 1.85392 2.96213 3.19890 3.31845 3.38997 3.42138 3.63681 3.91982 4.26225 4.46818 4.59953 4.77352 5.16638 5.26021 5.34207 5.37760 5.45254 5.55180 5.64495 5.73698 5.90750 6.20237 6.21979 6.60170 6.86880 7.73271 7.81623 7.84426 7.99270 8.05605 8.37080 8.71767 9.06915 9.61988 11.13581 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.050850 B = 0.003955 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.508889 B = 7077.608273 C = 7184.595740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.031 3.969 3 N -0.368 5.368 4 O 0.097 5.903 5 C -0.037 4.037 6 C -0.218 4.218 7 C 0.198 3.802 8 N -0.741 5.741 9 C 0.511 3.489 10 O -0.533 6.533 11 C -0.129 4.129 12 C 0.036 3.964 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.220 0.780 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.398 0.602 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.999 17.505 6.523 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 N -0.074 5.074 4 O 0.033 5.967 5 C -0.120 4.120 6 C -0.222 4.222 7 C 0.074 3.926 8 N -0.396 5.396 9 C 0.300 3.700 10 O -0.408 6.408 11 C -0.169 4.169 12 C -0.001 4.001 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.102 0.898 22 H 0.103 0.897 23 H 0.095 0.905 24 H 0.236 0.764 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.232 0.768 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.700 18.037 7.241 20.254 hybrid contribution -0.175 -0.885 -1.232 1.527 sum 5.525 17.152 6.009 18.995 Atomic orbital electron populations 1.20216 0.85699 1.03908 1.03814 1.23596 0.99202 0.88207 1.01847 1.73872 0.89403 1.24130 1.20039 1.84838 1.21624 1.22957 1.67231 1.25950 1.00836 0.83586 1.01592 1.21389 0.92579 0.97517 1.10717 1.19300 1.01108 0.86326 0.85879 1.46276 1.71289 1.12795 1.09279 1.21601 0.75209 0.80363 0.92869 1.90680 1.51757 1.51664 1.46747 1.21875 1.01728 1.03001 0.90327 1.18914 0.97629 0.86706 0.96887 1.21260 1.45512 0.95801 0.93955 0.92550 1.25021 0.95652 0.96757 0.96933 1.70001 1.47518 1.04265 1.31052 0.86542 0.78097 0.78606 0.84749 1.19751 1.21012 1.21006 0.89808 0.89732 0.90510 0.76398 0.90381 0.90365 0.76834 0.90200 0.90210 0.95789 0.95784 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.39 36.01 0.37 -0.31 16 2 C 0.03 0.33 7.33 -82.10 -0.60 -0.27 16 3 N -0.37 -4.31 12.07 33.42 0.40 -3.91 16 4 O 0.10 0.98 11.20 17.17 0.19 1.17 16 5 C -0.04 -0.30 12.26 29.74 0.36 0.07 16 6 C -0.22 -2.14 5.69 -104.42 -0.59 -2.73 16 7 C 0.20 2.27 6.16 -5.19 -0.03 2.24 16 8 N -0.74 -9.76 5.55 -61.46 -0.34 -10.10 16 9 C 0.51 9.38 7.83 -10.99 -0.09 9.29 16 10 O -0.53 -12.11 15.98 5.56 0.09 -12.02 16 11 C -0.13 -2.55 5.64 -27.88 -0.16 -2.71 16 12 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 13 C -0.53 -14.81 9.11 -34.44 -0.31 -15.13 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.08 0.70 7.98 -51.93 -0.41 0.29 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.22 0.92 8.06 -52.48 -0.42 0.50 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 0.95 7.98 -51.93 -0.41 0.53 16 27 H 0.40 4.35 8.46 -40.82 -0.35 4.00 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 288.51 15.07 4.35 4.35 Total: -1.00 -34.42 288.51 -4.95 -39.37 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -4.09 Total: -1.71 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -1.26 Total: -7.14 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.80 Total: -40.50 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.28 Total: -10.84 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.42 -4.95 -39.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601613602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.871 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds