Wall clock time and date at job start Sun Mar 29 2020 22:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47158 * 259.97571 * 7 6 5 9 9 C 1.34770 * 120.00006 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00129 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99843 * 179.97438 * 9 8 7 12 12 C 1.53005 * 109.46872 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.46725 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00136 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99469 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00673 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99649 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47271 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47035 * 120.00070 * 17 15 13 20 20 H 1.48498 * 109.47326 * 240.00161 * 17 15 13 21 21 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 22 22 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 23 23 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 24 24 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 25 25 H 1.08999 * 109.47083 * 19.97348 * 7 6 5 26 26 H 1.09007 * 109.47121 * 139.97728 * 7 6 5 27 27 H 0.97000 * 119.99417 * 359.97438 * 8 7 6 28 28 H 1.08999 * 109.47043 * 299.99353 * 11 9 8 29 29 H 1.09007 * 109.47038 * 59.99658 * 11 9 8 30 30 H 1.08999 * 109.47183 * 299.99786 * 12 11 9 31 31 H 1.09001 * 109.46729 * 60.00117 * 12 11 9 32 32 H 0.96989 * 120.00485 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 7 1.6036 -2.9997 -1.3480 9 6 1.2153 -4.2680 -1.5870 10 8 1.1607 -5.0673 -0.6765 11 6 0.8491 -4.6929 -2.9858 12 6 0.4484 -6.1695 -2.9817 13 6 0.0816 -6.5943 -4.3804 14 1 0.1299 -5.8825 -5.1911 15 6 -0.3147 -7.8920 -4.6250 16 7 -0.3731 -8.7590 -3.6379 17 14 -0.7687 -8.4187 -6.3588 18 1 -0.6201 -7.2647 -7.2817 19 1 0.1299 -9.5183 -6.7933 20 1 -2.1760 -8.8920 -6.3799 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5133 24 1 4.5339 -1.1535 0.0156 25 1 2.7948 -3.1888 0.3679 26 1 1.1021 -2.7284 0.6704 27 1 1.6470 -2.3603 -2.0761 28 1 0.0135 -4.0903 -3.3416 29 1 1.7059 -4.5511 -3.6447 30 1 1.2843 -6.7719 -2.6261 31 1 -0.4082 -6.3116 -2.3228 32 1 -0.6522 -9.6718 -3.8100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601613602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:41 Heat of formation + Delta-G solvation = -18.284829 kcal Electronic energy + Delta-G solvation = -16061.268965 eV Core-core repulsion = 13216.733201 eV Total energy + Delta-G solvation = -2844.535764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.98752 -40.64636 -37.02004 -35.54342 -34.96260 -33.21694 -32.62314 -29.71030 -28.70035 -26.96028 -23.68657 -22.51365 -22.31080 -21.20202 -18.89810 -18.62791 -18.43111 -17.39649 -16.91588 -16.65024 -16.37339 -15.69018 -14.99531 -14.67432 -14.25913 -14.14916 -14.13392 -13.77849 -13.44617 -13.32390 -13.19294 -12.82795 -12.43472 -12.12867 -11.89800 -11.61683 -11.27608 -11.14107 -10.77254 -10.56037 -10.42066 -10.08957 -8.16471 -6.30058 0.47919 1.05052 1.43911 1.44742 1.58007 1.73502 2.27131 2.40560 2.52762 3.16033 3.16906 3.54381 3.81855 3.99135 4.11598 4.51401 4.53484 4.58038 4.60177 4.68477 4.71118 4.80975 4.90692 5.11431 5.18279 5.41787 5.53590 5.66734 5.88205 6.20059 6.59304 6.88972 7.26758 7.34209 7.40429 8.96313 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.050850 B = 0.003955 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.508889 B = 7077.608273 C = 7184.595740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.025 3.975 3 N -0.395 5.395 4 O 0.091 5.909 5 C -0.010 4.010 6 C -0.234 4.234 7 C 0.203 3.797 8 N -0.715 5.715 9 C 0.516 3.484 10 O -0.586 6.586 11 C -0.120 4.120 12 C 0.040 3.960 13 C -0.542 4.542 14 H 0.075 0.925 15 C -0.006 4.006 16 N -0.937 5.937 17 Si 0.972 3.028 18 H -0.253 1.253 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.259 0.741 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.413 0.587 28 H 0.103 0.897 29 H 0.104 0.896 30 H -0.016 1.016 31 H -0.016 1.016 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.694 19.041 5.020 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 N -0.104 5.104 4 O 0.030 5.970 5 C -0.092 4.092 6 C -0.238 4.238 7 C 0.079 3.921 8 N -0.369 5.369 9 C 0.304 3.696 10 O -0.465 6.465 11 C -0.159 4.159 12 C 0.003 3.997 13 C -0.580 4.580 14 H 0.093 0.907 15 C -0.203 4.203 16 N -0.577 5.577 17 Si 0.796 3.204 18 H -0.177 1.177 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.109 0.891 22 H 0.104 0.896 23 H 0.100 0.900 24 H 0.275 0.725 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.250 0.750 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.003 0.997 31 H 0.002 0.998 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.421 19.656 5.719 21.455 hybrid contribution -0.345 -1.314 -0.701 1.528 sum 6.076 18.343 5.019 19.964 Atomic orbital electron populations 1.20286 0.84910 1.04267 1.04346 1.23909 0.99988 0.88300 1.01250 1.73885 0.90007 1.24893 1.21580 1.84821 1.21108 1.23895 1.67136 1.26642 1.01649 0.82743 0.98197 1.21170 0.93357 0.96257 1.13050 1.19272 1.01048 0.87487 0.84282 1.45956 1.69006 1.11101 1.10844 1.21250 0.75153 0.81507 0.91669 1.90670 1.54423 1.53565 1.47874 1.21637 1.03545 0.98636 0.92127 1.18709 0.94560 0.90959 0.95496 1.21756 1.44910 0.96410 0.94911 0.90688 1.26102 0.95489 0.96953 1.01793 1.70171 1.48811 1.04796 1.33971 0.85303 0.77591 0.78575 0.78945 1.17693 1.20671 1.20696 0.89129 0.89605 0.89961 0.72543 0.89898 0.91100 0.75029 0.87869 0.87791 0.99739 0.99804 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.39 71.24 0.74 -0.56 16 2 C 0.02 0.49 7.33 43.58 0.32 0.81 16 3 N -0.40 -8.63 12.07 -49.55 -0.60 -9.23 16 4 O 0.09 1.65 11.20 71.60 0.80 2.45 16 5 C -0.01 -0.13 12.26 67.17 0.82 0.69 16 6 C -0.23 -4.06 5.69 -19.74 -0.11 -4.18 16 7 C 0.20 4.30 6.16 85.63 0.53 4.83 16 8 N -0.72 -17.45 5.55 -466.76 -2.59 -20.04 16 9 C 0.52 18.64 7.83 87.66 0.69 19.32 16 10 O -0.59 -27.24 15.98 -3.03 -0.05 -27.29 16 11 C -0.12 -4.60 5.64 29.85 0.17 -4.43 16 12 C 0.04 2.20 4.26 29.85 0.13 2.33 16 13 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 14 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 15 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 16 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 17 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 18 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 22 H 0.09 1.34 7.98 -2.39 -0.02 1.32 16 23 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.26 1.04 8.06 -2.91 -0.02 1.01 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 1.66 7.98 -2.38 -0.02 1.64 16 27 H 0.41 7.80 8.46 -92.71 -0.78 7.01 16 28 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 29 H 0.10 3.49 8.14 -2.38 -0.02 3.47 16 30 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 31 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 32 H 0.26 15.41 8.31 -92.72 -0.77 14.64 16 Total: -1.00 -77.09 288.51 4.20 -72.89 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 0.35 Total: 5.22 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 3.98 Total: -11.25 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -2.90 Total: -87.89 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: 0.75 Total: -24.84 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -77.09 4.20 -72.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601613602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.604 kcal (2) G-P(sol) polarization free energy of solvation -77.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds