Wall clock time and date at job start Sun Mar 29 2020 22:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 115.51824 * 2 1 4 4 C 1.52998 * 117.45148 * 145.44418 * 2 1 3 5 5 H 1.09000 * 118.01969 * 359.11011 * 4 2 1 6 6 C 1.51427 * 116.45075 * 214.24374 * 4 2 1 7 7 O 1.21286 * 120.22479 * 112.41302 * 6 4 2 8 8 N 1.34298 * 119.54936 * 292.39897 * 6 4 2 9 9 N 1.38912 * 123.99454 * 359.96991 * 8 6 4 10 10 C 1.46506 * 117.99961 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47097 * 270.00170 * 10 9 8 12 12 H 1.07998 * 120.00471 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99849 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00236 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99947 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47153 * 89.99864 * 15 13 11 17 17 H 1.48494 * 109.47009 * 210.00154 * 15 13 11 18 18 H 1.48505 * 109.47022 * 330.00058 * 15 13 11 19 19 C 1.34297 * 123.99880 * 0.29111 * 9 8 6 20 20 O 1.21279 * 120.22960 * 179.71505 * 19 9 8 21 21 C 1.51470 * 119.53059 * 358.44494 * 19 9 8 22 22 H 1.09008 * 117.29520 * 214.40207 * 21 19 9 23 23 H 1.09002 * 109.46898 * 325.95226 * 1 2 3 24 24 H 1.08999 * 109.47718 * 85.94914 * 1 2 3 25 25 H 1.08997 * 109.46844 * 205.95724 * 1 2 3 26 26 H 1.09003 * 109.47066 * 154.04468 * 3 2 1 27 27 H 1.08994 * 109.47391 * 274.04668 * 3 2 1 28 28 H 1.09003 * 109.47046 * 34.05220 * 3 2 1 29 29 H 0.97001 * 117.99796 * 180.02562 * 8 6 4 30 30 H 1.09001 * 109.46919 * 30.00594 * 10 9 8 31 31 H 1.09007 * 109.46410 * 150.00262 * 10 9 8 32 32 H 0.96999 * 120.00320 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1891 1.3808 0.0000 4 6 2.2353 -1.1182 0.7701 5 1 1.6176 -1.8492 1.2917 6 6 3.5408 -0.7529 1.4449 7 8 3.6177 -0.7325 2.6551 8 7 4.6129 -0.4520 0.6941 9 7 4.6129 -0.4516 -0.6950 10 6 5.8586 -0.1027 -1.3827 11 6 5.9026 1.3852 -1.6181 12 1 5.0848 2.0086 -1.2881 13 6 6.9876 1.9507 -2.2538 14 7 7.0263 3.2492 -2.4589 15 14 8.4025 0.8725 -2.8240 16 1 8.1448 0.4105 -4.2115 17 1 9.6651 1.6533 -2.7887 18 1 8.5223 -0.3033 -1.9249 19 6 3.5394 -0.7467 -1.4461 20 8 3.6149 -0.7202 -2.6562 21 6 2.2418 -1.1408 -0.7715 22 1 1.6202 -1.8802 -1.2767 23 1 -0.3633 0.8515 0.5754 24 1 -0.3634 0.0726 -1.0251 25 1 -0.3633 -0.9240 0.4498 26 1 3.1795 1.3106 0.4498 27 1 2.2802 1.7400 -1.0250 28 1 1.5772 2.0755 0.5755 29 1 5.4377 -0.2216 1.1497 30 1 6.7084 -0.3986 -0.7675 31 1 5.9036 -0.6234 -2.3393 32 1 7.7894 3.6470 -2.9064 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601930611.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:27 Heat of formation + Delta-G solvation = -4.511775 kcal Electronic energy + Delta-G solvation = -17578.294797 eV Core-core repulsion = 14734.356277 eV Total energy + Delta-G solvation = -2843.938519 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09410 -38.44409 -37.17423 -35.91039 -33.01509 -31.05561 -29.81911 -27.93010 -27.52325 -24.77532 -23.52815 -21.75107 -19.61155 -18.10165 -17.23017 -17.19044 -16.90100 -15.59936 -15.03556 -14.74271 -14.55243 -13.95231 -13.85145 -13.68476 -12.99352 -12.80351 -12.53248 -12.28976 -12.19661 -12.02294 -11.59842 -11.26627 -10.88822 -10.70804 -10.49147 -10.15214 -10.05583 -9.76169 -9.60258 -9.24993 -8.75120 -7.58653 -6.24256 -4.26724 2.24949 2.41175 2.71098 3.19054 3.24094 3.27288 3.65553 3.88170 4.24738 4.25383 4.50619 4.74400 4.77743 4.96843 5.08651 5.45936 5.60184 5.69780 5.81992 5.87319 5.92757 5.98984 6.11429 6.29607 6.43042 6.45737 6.69605 7.09493 7.33017 8.04184 8.20655 8.28537 8.69198 8.78920 9.32470 10.88206 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.008213 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.662053 B = 3408.453966 C = 3589.296804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.070 4.070 3 C -0.134 4.134 4 C -0.166 4.166 5 H 0.145 0.855 6 C 0.548 3.452 7 O -0.536 6.536 8 N -0.498 5.498 9 N -0.388 5.388 10 C 0.210 3.790 11 C -0.541 4.541 12 H 0.080 0.920 13 C 0.079 3.921 14 N -0.888 5.888 15 Si 0.874 3.126 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.547 3.453 20 O -0.513 6.513 21 C -0.166 4.166 22 H 0.147 0.853 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.423 0.577 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 -8.052 5.021 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.072 4.072 3 C -0.191 4.191 4 C -0.187 4.187 5 H 0.163 0.837 6 C 0.334 3.666 7 O -0.411 6.411 8 N -0.246 5.246 9 N -0.214 5.214 10 C 0.090 3.910 11 C -0.579 4.579 12 H 0.098 0.902 13 C -0.126 4.126 14 N -0.525 5.525 15 Si 0.701 3.299 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.190 1.190 19 C 0.333 3.667 20 O -0.385 6.385 21 C -0.187 4.187 22 H 0.165 0.835 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.266 0.734 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.221 -7.932 4.825 13.086 hybrid contribution 1.229 -0.313 -0.175 1.280 sum -7.993 -8.245 4.650 12.389 Atomic orbital electron populations 1.21398 0.90285 1.02623 1.02792 1.21975 0.95516 0.90937 0.98737 1.21638 1.00922 0.92809 1.03779 1.23257 0.97616 1.04762 0.93058 0.83713 1.19423 0.83931 0.76906 0.86300 1.90781 1.83227 1.54770 1.12348 1.45009 1.14982 1.68830 0.95760 1.47277 1.14153 1.67589 0.92381 1.20163 0.79260 0.98380 0.93159 1.21221 1.06836 0.89793 1.40094 0.90178 1.24814 0.97978 0.94954 0.94807 1.69870 1.30942 1.10157 1.41537 0.86885 0.82093 0.80763 0.80194 1.19620 1.20781 1.19009 1.19093 0.82808 0.78182 0.86598 1.90763 1.82022 1.53574 1.12191 1.23611 0.98560 1.04244 0.92302 0.83491 0.91245 0.91139 0.91868 0.91158 0.90633 0.91310 0.73433 0.94301 0.92270 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.86 37.16 0.37 -0.75 16 2 C -0.07 -0.95 2.72 -153.44 -0.42 -1.36 16 3 C -0.13 -2.13 8.59 37.16 0.32 -1.82 16 4 C -0.17 -2.27 6.01 -90.80 -0.55 -2.82 16 5 H 0.15 1.59 8.07 -51.93 -0.42 1.17 16 6 C 0.55 9.12 6.42 -10.84 -0.07 9.05 16 7 O -0.54 -10.04 17.92 5.55 0.10 -9.94 16 8 N -0.50 -8.71 5.21 31.33 0.16 -8.54 16 9 N -0.39 -7.71 3.05 -61.30 -0.19 -7.90 16 10 C 0.21 4.74 4.24 -5.19 -0.02 4.72 16 11 C -0.54 -14.51 9.93 -34.44 -0.34 -14.85 16 12 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 13 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 14 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 15 Si 0.87 20.25 27.47 -169.99 -4.67 15.58 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -5.73 6.54 56.52 0.37 -5.36 16 19 C 0.55 10.76 6.47 -10.82 -0.07 10.69 16 20 O -0.51 -11.89 16.51 5.56 0.09 -11.80 16 21 C -0.17 -2.43 6.34 -89.71 -0.57 -3.00 16 22 H 0.15 1.76 8.14 -51.92 -0.42 1.34 16 23 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.51 7.91 -51.93 -0.41 0.10 16 26 H 0.07 1.28 5.20 -51.93 -0.27 1.01 16 27 H 0.07 1.34 8.12 -51.93 -0.42 0.91 16 28 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16 29 H 0.42 7.00 8.54 -183.49 -1.57 5.44 16 30 H 0.04 0.82 7.09 -51.93 -0.37 0.45 16 31 H 0.06 1.40 6.71 -51.93 -0.35 1.05 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 271.01 15.07 4.08 4.08 Total: -1.00 -31.73 271.01 -6.15 -37.89 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.06 Total: 4.04 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.45 Total: 1.92 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.75 Total: -41.76 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.19 Total: -21.75 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.73 -6.15 -37.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601930611.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.374 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds