Wall clock time and date at job start Sun Mar 29 2020 22:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 115.51824 * 2 1 4 4 C 1.52998 * 117.45148 * 145.44418 * 2 1 3 5 5 H 1.09000 * 118.01969 * 359.11011 * 4 2 1 6 6 C 1.51427 * 116.45075 * 214.24374 * 4 2 1 7 7 O 1.21286 * 120.22479 * 112.41302 * 6 4 2 8 8 N 1.34298 * 119.54936 * 292.39897 * 6 4 2 9 9 N 1.38912 * 123.99454 * 359.96991 * 8 6 4 10 10 C 1.46506 * 117.99961 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47097 * 270.00170 * 10 9 8 12 12 H 1.07998 * 120.00471 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99849 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00236 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99947 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47153 * 89.99864 * 15 13 11 17 17 H 1.48494 * 109.47009 * 210.00154 * 15 13 11 18 18 H 1.48505 * 109.47022 * 330.00058 * 15 13 11 19 19 C 1.34297 * 123.99880 * 0.29111 * 9 8 6 20 20 O 1.21279 * 120.22960 * 179.71505 * 19 9 8 21 21 C 1.51470 * 119.53059 * 358.44494 * 19 9 8 22 22 H 1.09008 * 117.29520 * 214.40207 * 21 19 9 23 23 H 1.09002 * 109.46898 * 325.95226 * 1 2 3 24 24 H 1.08999 * 109.47718 * 85.94914 * 1 2 3 25 25 H 1.08997 * 109.46844 * 205.95724 * 1 2 3 26 26 H 1.09003 * 109.47066 * 154.04468 * 3 2 1 27 27 H 1.08994 * 109.47391 * 274.04668 * 3 2 1 28 28 H 1.09003 * 109.47046 * 34.05220 * 3 2 1 29 29 H 0.97001 * 117.99796 * 180.02562 * 8 6 4 30 30 H 1.09001 * 109.46919 * 30.00594 * 10 9 8 31 31 H 1.09007 * 109.46410 * 150.00262 * 10 9 8 32 32 H 0.96999 * 120.00320 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1891 1.3808 0.0000 4 6 2.2353 -1.1182 0.7701 5 1 1.6176 -1.8492 1.2917 6 6 3.5408 -0.7529 1.4449 7 8 3.6177 -0.7325 2.6551 8 7 4.6129 -0.4520 0.6941 9 7 4.6129 -0.4516 -0.6950 10 6 5.8586 -0.1027 -1.3827 11 6 5.9026 1.3852 -1.6181 12 1 5.0848 2.0086 -1.2881 13 6 6.9876 1.9507 -2.2538 14 7 7.0263 3.2492 -2.4589 15 14 8.4025 0.8725 -2.8240 16 1 8.1448 0.4105 -4.2115 17 1 9.6651 1.6533 -2.7887 18 1 8.5223 -0.3033 -1.9249 19 6 3.5394 -0.7467 -1.4461 20 8 3.6149 -0.7202 -2.6562 21 6 2.2418 -1.1408 -0.7715 22 1 1.6202 -1.8802 -1.2767 23 1 -0.3633 0.8515 0.5754 24 1 -0.3634 0.0726 -1.0251 25 1 -0.3633 -0.9240 0.4498 26 1 3.1795 1.3106 0.4498 27 1 2.2802 1.7400 -1.0250 28 1 1.5772 2.0755 0.5755 29 1 5.4377 -0.2216 1.1497 30 1 6.7084 -0.3986 -0.7675 31 1 5.9036 -0.6234 -2.3393 32 1 7.7894 3.6470 -2.9064 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601930611.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:27 Heat of formation + Delta-G solvation = -27.575685 kcal Electronic energy + Delta-G solvation = -17579.294923 eV Core-core repulsion = 14734.356277 eV Total energy + Delta-G solvation = -2844.938646 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.46856 -39.96525 -38.44122 -37.50072 -35.02923 -32.75103 -30.98775 -29.67614 -28.61056 -26.16778 -25.08147 -23.46821 -20.86358 -19.47513 -19.25035 -18.59196 -18.38042 -17.00756 -16.70058 -16.32616 -15.93965 -15.49208 -15.21074 -15.05636 -14.58148 -14.22322 -13.93668 -13.74935 -13.48249 -13.40877 -13.17377 -12.65370 -12.48222 -12.32968 -11.86211 -11.77124 -11.57535 -11.37827 -11.08946 -10.87149 -10.65376 -9.18722 -8.37570 -6.45831 0.75485 1.05696 1.31001 1.35197 1.37299 1.45064 2.27839 2.32562 2.62424 2.96262 3.10055 3.37485 3.49445 3.65613 3.94578 4.29433 4.54307 4.56618 4.58840 4.68178 4.72863 4.79310 4.96958 4.98891 5.05602 5.13490 5.29871 5.35510 5.58694 6.12178 6.56394 6.64064 6.70324 7.13371 7.24306 8.78498 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.008213 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.662053 B = 3408.453966 C = 3589.296804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.151 4.151 5 H 0.187 0.813 6 C 0.547 3.453 7 O -0.555 6.555 8 N -0.499 5.499 9 N -0.392 5.392 10 C 0.215 3.785 11 C -0.544 4.544 12 H 0.035 0.965 13 C 0.018 3.982 14 N -0.938 5.938 15 Si 0.944 3.056 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.235 1.235 19 C 0.536 3.464 20 O -0.558 6.558 21 C -0.167 4.167 22 H 0.183 0.817 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.423 0.577 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.371 -10.354 5.923 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.065 4.065 3 C -0.194 4.194 4 C -0.172 4.172 5 H 0.204 0.796 6 C 0.335 3.665 7 O -0.431 6.431 8 N -0.247 5.247 9 N -0.216 5.216 10 C 0.095 3.905 11 C -0.582 4.582 12 H 0.053 0.947 13 C -0.181 4.181 14 N -0.577 5.577 15 Si 0.767 3.233 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.158 1.158 19 C 0.325 3.675 20 O -0.434 6.434 21 C -0.188 4.188 22 H 0.200 0.800 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.266 0.734 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.390 -10.254 5.765 15.695 hybrid contribution 1.542 0.523 -0.407 1.678 sum -8.848 -9.731 5.358 14.202 Atomic orbital electron populations 1.21466 0.86642 1.04657 1.03785 1.22144 0.97796 0.88906 0.97629 1.21613 1.00286 0.95515 1.01968 1.23444 0.96167 1.05434 0.92106 0.79579 1.19993 0.84527 0.75929 0.86072 1.90775 1.83542 1.55622 1.13209 1.45077 1.15786 1.69227 0.94572 1.47147 1.13680 1.67305 0.93515 1.19889 0.81535 0.95274 0.93846 1.21391 1.05437 0.91795 1.39584 0.94680 1.25787 1.01186 0.96306 0.94838 1.70026 1.32234 1.12423 1.43062 0.85770 0.78006 0.79658 0.79912 1.19680 1.20304 1.15788 1.20053 0.84072 0.77055 0.86363 1.90725 1.82921 1.55465 1.14239 1.23651 0.96301 1.05965 0.92876 0.79980 0.90312 0.90514 0.88946 0.94016 0.93555 0.89095 0.73409 0.91971 0.92915 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.86 71.98 0.71 -0.96 16 2 C -0.06 -1.54 2.72 -51.49 -0.14 -1.68 16 3 C -0.14 -4.34 8.59 71.98 0.62 -3.72 16 4 C -0.15 -3.61 6.01 -10.91 -0.07 -3.68 16 5 H 0.19 3.00 8.07 -2.39 -0.02 2.98 16 6 C 0.55 17.30 6.42 87.96 0.56 17.87 16 7 O -0.56 -19.87 17.92 -3.05 -0.05 -19.92 16 8 N -0.50 -17.25 5.21 -173.46 -0.90 -18.16 16 9 N -0.39 -15.65 3.05 -466.52 -1.42 -17.07 16 10 C 0.22 9.79 4.24 85.63 0.36 10.15 16 11 C -0.54 -30.23 9.93 25.60 0.25 -29.98 16 12 H 0.03 2.20 8.06 -2.91 -0.02 2.18 16 13 C 0.02 1.02 5.47 84.66 0.46 1.49 16 14 N -0.94 -57.22 13.96 21.45 0.30 -56.92 16 15 Si 0.94 41.80 27.47 68.60 1.88 43.69 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.23 -9.16 6.54 99.48 0.65 -8.51 16 19 C 0.54 20.98 6.47 87.98 0.57 21.54 16 20 O -0.56 -26.28 16.51 -3.03 -0.05 -26.33 16 21 C -0.17 -4.48 6.34 -10.20 -0.06 -4.54 16 22 H 0.18 3.61 8.14 -2.38 -0.02 3.59 16 23 H 0.08 1.10 7.91 -2.39 -0.02 1.08 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.09 0.94 7.91 -2.39 -0.02 0.92 16 26 H 0.04 1.54 5.20 -2.39 -0.01 1.53 16 27 H 0.05 1.71 8.12 -2.39 -0.02 1.69 16 28 H 0.09 2.40 7.91 -2.39 -0.02 2.38 16 29 H 0.42 14.04 8.54 -214.08 -1.83 12.21 16 30 H 0.06 2.54 7.09 -2.39 -0.02 2.52 16 31 H 0.05 2.49 6.71 -2.38 -0.02 2.48 16 32 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -72.42 271.01 2.29 -70.13 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.74 Total: 18.10 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 3.27 Total: 6.49 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -2.03 Total: -92.15 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -0.10 Total: -46.26 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.88 Total: 43.69 kcal Total: -72.42 2.29 -70.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601930611.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.559 kcal (2) G-P(sol) polarization free energy of solvation -72.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds